Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3102g00006 ATGGCGCTAGAGGCTGTGGTATTTCCGCAAGATCCGTTTCCGTACGCTTGCAAGGATTATTTTTACTCCTTAGTAGGAGCAGCACCCGATTACGGTTTTCAAGCGGCGGAAGAAGAGAAACTCCTCTTAGGAATCATCAACAACAACATAGAAGACAACCTATACACAACCTGGGATTCTTCTTCTACCTCGGTCTTGCAAAATGTGAAGGAACAATGGGATTCTCACTCCTCCCCCGAAGCCTGCACTGTTGATGAATCCATGATCCCACCTCTTTCTTCCACAGCTGAAGCCACCGCCACAACCACGACTCGGCGGAAACGGCGCCGTACGAAGAGCGCGAAGAACAAAGAGGAAATCGAAAACCAGAGGATGACCCACATTGCAGTTGAACGGAACCGCAGAAAGCAGATGAACGAGTACTTAGCCGTACTCCGATCCTTGATGCCCTCCTCTTACGTTCAGAGGGGTGACCAAGCGTCTATCATCGGAGGCGCCATTAACTTCGTGAAGGAGTTGGAGCAGGTTTTGCAGTCAATGGAGGGTGAAAAGAGACGGAAGCAGGGTGAAGAAGAGAATGTTGGGTTGAATGGGTGGACGACACCCTTTGCCGAGTTCTTCACGTTTCCTCAGTACACGACACGTGGCAATCAGAAGCAGGAACAGAAACAGTGGGCCGTAGCAGACATTGAAGTCACCATGGTCGATAGTCATGCCAATCTAAAGATTCTCGCGAAGAAACAACCCTCCCATCTCATGAAGATCGTTCTCGGCCTTCAAACTCTCAGACTCACCATTCTCCACCTCAATGTCACCACTCTCCACCACATGGTCCTTTACTCCATCAGCGTTAAGGTAGAGGAGGGTTGCGAGCTGAACACGGTGGATGAAATTGCGGCGGCGGTGAATCAACTGTTAGGCACAATCCAAGAAGTTGCATTCAGCTGA 948 0.5 MALEAVVFPQDPFPYACKDYFYSLVGAAPDYGFQAAEEEKLLLGIINNNIEDNLYTTWDSSSTSVLQNVKEQWDSHSSPEACTVDESMIPPLSSTAEATATTTTRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQVLQSMEGEKRRKQGEEENVGLNGWTTPFAEFFTFPQYTTRGNQKQEQKQWAVADIEVTMVDSHANLKILAKKQPSHLMKIVLGLQTLRLTILHLNVTTLHHMVLYSISVKVEEGCELNTVDEIAAAVNQLLGTIQEVAFS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3102g00006 315 MobiDBLite consensus disorder prediction 90 118 - -
Vium3102g00006 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 188 IPR036638 GO:0046983
Vium3102g00006 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 173 IPR011598 GO:0046983
Vium3102g00006 315 Pfam Helix-loop-helix DNA-binding domain 123 174 IPR011598 GO:0046983
Vium3102g00006 315 PANTHER MAX DIMERIZATION, MAD 70 312 - -
Vium3102g00006 315 SMART finulus 128 179 IPR011598 GO:0046983
Vium3102g00006 315 FunFam Basic helix-loop-helix transcription factor 113 188 - -
Vium3102g00006 315 Coils Coil 170 193 - -
Vium3102g00006 315 Gene3D - 112 197 IPR036638 GO:0046983
Vium3102g00006 315 CDD bHLH_AtFAMA_like 125 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3102g00006 Vium-Chr3102 88442 90156 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3102g00006 1 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G22490 50.000 3.49e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3102g00006 HLH 4.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3102g00006 - - gmx:100789380 479.559