Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3102g00005 ATGATCACTCTGCCACTCACCACCTTCCACCATGACCTTTTCCTTTTTTACTGTTATTTTATTCTCCTCACGCACTTTCCGCCACCGGCCACCGCGCAGCTTCCCAACGAGCACACGCCACCGCCGCCGCTGGACCGCTTATCCAAGCTGAAGTTCGACAAGTCCATGGCCATCGTTCTGGTGATTCTGGTGGCGGTGTTCTTCTTCCTCGGGTTCCTCTCCGTGTACACGCGCCGGTGCGCGGAGCGAAGTATGCGAGGGAGGTTCGACCTGTCCATCTCGATCACGCGTCGGCCACGTGGTCTTGACCGCGAAATCATCGAGACCTTCCCCACCTTCGTCTACTCCACCGTGAAGAGCCTCAAGATAGGACGCGCCACGCTGGAATGCGCCGTGTGCCTGAACGAGTTCGAGGAGGCGGAAACGCTGCGTTTGATACCCAAGTGCAGCCACGTGTTCCACCCAGAGTGCATCGACGCGTGGCTCGCCAATCACTCCACTTGTCCCGTCTGTCGTGCCAACCTTGTCCCCAAACCCGACGACCCCTCCTTTGTTTCCATCCCAATCCCGGATCCGGTTCAACCCGTTTTAAACTCCCCGGTCCAACCCGAACCCACGGTTTCTCCCAAGCCCAATGATTTCATTAATCGCAACCGTTCACCGCGGTCAAGGTCAACGGGTTTCAGCATCGCCAGCTTGATTCCGCGATCTCACTCGACGGGTCACTCGCTGGTTCAACCGGGAGAGAATTGCGAGAGGTTCACTCTGCGTTTGCCCGAGGAAGTGCGGAACCAGCTGATGACTTCTACGACGCTGAGTCGCACCAAGAGTTGCGGCTTGAGCCCGGGATTCACGCGCGAGAACAGTGGGAGGAGGGGTTACAGGACCAGAAGCGTTGGTCACAGTCTTAGTCCTCACGTGACAAGAGGCATGGGGGGCAGCAGCAGCCCTCACGGGCGGGGACACGACAGACGGTGGTTTTTTCAGAGCCCTCCGGCAAAGGACTCCATTAAGGAAGATGTCGGCGAACGTTCTTCGGATCGGCTTTTCTCGGAGACCAGAAAGGATACTGAGAATTAA 1080 0.575 MITLPLTTFHHDLFLFYCYFILLTHFPPPATAQLPNEHTPPPPLDRLSKLKFDKSMAIVLVILVAVFFFLGFLSVYTRRCAERSMRGRFDLSISITRRPRGLDREIIETFPTFVYSTVKSLKIGRATLECAVCLNEFEEAETLRLIPKCSHVFHPECIDAWLANHSTCPVCRANLVPKPDDPSFVSIPIPDPVQPVLNSPVQPEPTVSPKPNDFINRNRSPRSRSTGFSIASLIPRSHSTGHSLVQPGENCERFTLRLPEEVRNQLMTSTTLSRTKSCGLSPGFTRENSGRRGYRTRSVGHSLSPHVTRGMGGSSSPHGRGHDRRWFFQSPPAKDSIKEDVGERSSDRLFSETRKDTEN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3102g00005 359 MobiDBLite consensus disorder prediction 197 225 - -
Vium3102g00005 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 177 IPR013083 -
Vium3102g00005 359 MobiDBLite consensus disorder prediction 336 359 - -
Vium3102g00005 359 MobiDBLite consensus disorder prediction 273 359 - -
Vium3102g00005 359 CDD RING-H2_EL5-like 129 172 - -
Vium3102g00005 359 Pfam Ring finger domain 129 172 IPR001841 -
Vium3102g00005 359 FunFam E3 ubiquitin-protein ligase ATL6 91 178 - -
Vium3102g00005 359 SUPERFAMILY RING/U-box 124 180 - -
Vium3102g00005 359 PANTHER RING FINGER DOMAIN-CONTAINING 38 180 - -
Vium3102g00005 359 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Vium3102g00005 359 MobiDBLite consensus disorder prediction 209 225 - -
Vium3102g00005 359 SMART ring_2 130 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3102g00005 Vium-Chr3102 52088 53653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3102g00005 19 293 Rapid Response to Elicitors AT3G05200 44.014 9.32e-68 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3102g00005 K10664 - gmx:100805815 468.003