Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3102g00004 ATGGGTTTAAGGTACAGTACTGGTCCACAAAAGCATCAAGCAGTAATGACAAGTGCGAATCAAACAGTTTTCTATAGGTGCTGCATTGATGCATATCACGATACTCTCTATGCTTATTCCAACTGTCAATTCTACAGAGAATGTAACATCAATGCCACAGTTGATTTCATCTTTGGCAATTTTGCAGTTGTGATCCAAAACAGTAATATTAGGCCAAAGTTACCAATGACAGCGCGATCTTCCTCAGATGGCAGCGCGGTAGTCGGGGAAACAAATGATGCTCCACTTGAAACTGCAGGTCACCGTGAAACCAGTCCATCCAAGCAGAACAGCTAA 336 0.4256 MGLRYSTGPQKHQAVMTSANQTVFYRCCIDAYHDTLYAYSNCQFYRECNINATVDFIFGNFAVVIQNSNIRPKLPMTARSSSDGSAVVGETNDAPLETAGHRETSPSKQNS 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3102g00004 111 Gene3D - 1 100 IPR012334 -
Vium3102g00004 111 Pfam Pectinesterase 1 80 IPR000070 GO:0030599|GO:0042545
Vium3102g00004 111 SUPERFAMILY Pectin lyase-like 6 76 IPR011050 -
Vium3102g00004 111 MobiDBLite consensus disorder prediction 76 111 - -
Vium3102g00004 111 PANTHER PECTINESTERASE 2 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3102g00004 Vium-Chr3102 48401 48736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3102g00004 1 82 Carbohydrate Esterase AT3G10710 53.571 7.31e-25 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3102g00004 - - vum:124833150 231.876