Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3100g00003 ATGAAGGATGACTATGTTCAGTGTTCTGCCATGTCAGAGTATGATTTGGCAGCAGAGGGAGATCTGTTCAAAGCTCCTGAACCTATTATTGAAGAGCCAATCATGGACCTGGATCCCATGACAGCTGCTATCTCAATGATATCTTGTGGGGAAGATGTCTCCTCTCAGGGACTAAAATCCACTGATATTGATATTCTTCAAAATGATCAATTTCTGAGTGAGGTATTCTATGAATGCAAGAAGGATCTGTTAGAAAAGGCAGCAATAGAGTCACCACTCTCTGAGATTCTGGAAATCAAGGTTCCTCTTCTGAACATTGATGAAAACTCAATTCAAGAAAACAAGCCACTTTCTGACATGCAGTTAGGAAAGAGTGTCAGTTCAGGAAGTTTAAGCTCAATGGATTGGATTCGTGGAGCTGCAATGAAGCCTGCTTTCATTGATATCCCTGCAATGGATTTCAATGCAGTTTATGGCATGCGAAGATCATTTAGTGAAGGAGATATAAAGACTCTCGGTAACGGAAACATGAACATTGTCCAATCACCCCTTGAGAGGCCCTTTCTCATCAGCAACTGCACCAGTGAGGAACGCTTCCAAAAGCTCTCCAGGTACAGGAATAAGAGGACAAAGAGGAACTTTGGGAGGAAAATCAAGTATGCATGCAGGAAGGCTCTTGCTGACAGTCAACCAAGAATCCGTGGAAGATTTGCAAGAAGTGAAGAATGTGAGAGCAAGAGGGAATGA 747 0.4257 MKDDYVQCSAMSEYDLAAEGDLFKAPEPIIEEPIMDLDPMTAAISMISCGEDVSSQGLKSTDIDILQNDQFLSEVFYECKKDLLEKAAIESPLSEILEIKVPLLNIDENSIQENKPLSDMQLGKSVSSGSLSSMDWIRGAAMKPAFIDIPAMDFNAVYGMRRSFSEGDIKTLGNGNMNIVQSPLERPFLISNCTSEERFQKLSRYRNKRTKRNFGRKIKYACRKALADSQPRIRGRFARSEECESKRE 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3100g00003 248 ProSiteProfiles CCT domain profile. 198 240 IPR010402 GO:0005515
Vium3100g00003 248 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 113 242 IPR045281 GO:0009909
Vium3100g00003 248 Pfam CCT motif 198 240 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3100g00003 Vium-Chr3100 1858 5426 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3100g00003 194 245 C2C2-CO-like Transcription Factor Family AT5G57660 50.000 1.83e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium3100g00003 CCT 2.5e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3100g00003 - - gmx:100814332 437.187