Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3100g00002 ATGCTCAACTTAATCATTTCCTCATGGTATTTGTCGAGCACTACATGTAGTTCTAGAAAGGATGACTATGTTCAGTGTTCTGCCATGTCAGAGTATGATTTGGCAGCAGAGGGAGATCTGTTCAAAGCTCCTGAACCTATTATTGAAGAGCCAATCATGGACCTGGATCCCATGACAGCTGCTATCTCAATGATATCTTGTGGGGAAGATGTCTCCTCTCAGGGACTAAAATCCACTGATATTGATATTCTTCAAAATGATCAATTTCTGAGTGAGGTATTCTATGAATGCAAGAAGGATCTGTTAGAAAAGGCAGCAATAGAGTCACCACTCTCTGAGATTCTGGAAATCAAGGTTCCTCTTCTGAACATTGATGAAAACTCAATTCAAGAAAACAAGCCACTTTCTGACATGCAGTTAGGAAAGAGTGTCAGTTCAGGAAGTTTAAGCTCAATGGATTGGATTCGTGGAGCTGCAATGAAGCCTGCTTTCATTGATATCCCTGCAATGGATTTCAATGCAGTTTATGGCATGCGAAGATCATTTAGTGAAGGAGATATAAAGACTCTCGGTAACGGAAACATGAACATTGTCCAATCACCCCTTGAGAGGCCCTTTCTCATCAGCAACTGCACCAGTGAGGAACGCTTCCAAAAGCTCTCCAGGTACAGGAATAAGAGGACAAAGAGGAACTTTGGGAGGAAAATCAAGTATGCATGCAGGAAGGCTCTTGCTGACAGTCAACCAAGAATCCGTGGAAGATTTGCAAGAAGTGAAGAATGTGAGAGCAAGAGGGAATGA 801 0.422 MLNLIISSWYLSSTTCSSRKDDYVQCSAMSEYDLAAEGDLFKAPEPIIEEPIMDLDPMTAAISMISCGEDVSSQGLKSTDIDILQNDQFLSEVFYECKKDLLEKAAIESPLSEILEIKVPLLNIDENSIQENKPLSDMQLGKSVSSGSLSSMDWIRGAAMKPAFIDIPAMDFNAVYGMRRSFSEGDIKTLGNGNMNIVQSPLERPFLISNCTSEERFQKLSRYRNKRTKRNFGRKIKYACRKALADSQPRIRGRFARSEECESKRE 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3100g00002 266 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 131 260 IPR045281 GO:0009909
Vium3100g00002 266 ProSiteProfiles CCT domain profile. 216 258 IPR010402 GO:0005515
Vium3100g00002 266 Pfam CCT motif 216 258 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3100g00002 Vium-Chr3100 1858 6153 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3100g00002 212 263 C2C2-CO-like Transcription Factor Family AT5G57660 50.000 1.59e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium3100g00002 CCT 2.8e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3100g00002 - - gmx:100814332 438.728