Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3100g00001 ATGTATGCTGAAACCGGTCTTCTCTTCCCATATTTGCACAACCTCTCTCAAGAGCTTCACCAGCTTGAGGAGTACTGCAAAACCCATAAGTACAATGCTTCAATGGATGACTATGTTCAGTGTTCTGCCATGTCAGAGTATGATTTGGCAGCAGAGGGAGATCTGTTCAAAGCTCCTGAACCTATTATTGAAGAGCCAATCATGGACCTGGATCCCATGACAGCTGCTATCTCAATGATATCTTGTGGGGAAGATGTCTCCTCTCAGGGACTAAAATCCACTGATATTGATATTCTTCAAAATGATCAATTTCTGAGTGAGGTATTCTATGAATGCAAGAAGGATCTGTTAGAAAAGGCAGCAATAGAGTCACCACTCTCTGAGATTCTGGAAATCAAGGTTCCTCTTCTGAACATTGATGAAAACTCAATTCAAGAAAACAAGCCACTTTCTGACATGCAGTTAGGAAAGAGTGTCAGTTCAGGAAGTTTAAGCTCAATGGATTGGATTCGTGGAGCTGCAATGAAGCCTGCTTTCATTGATATCCCTGCAATGGATTTCAATGCAGTTTATGGCATGCGAAGATCATTTAGTGAAGGAGATATAAAGACTCTCGGTAACGGAAACATGAACATTGTCCAATCACCCCTTGAGAGGCCCTTTCTCATCAGCAACTGCACCAGTGAGGAACGCTTCCAAAAGCTCTCCAGGTACAGGAATAAGAGGACAAAGAGGAACTTTGGGAGGAAAATCAAGTATGCATGCAGGAAGGCTCTTGCTGACAGTCAACCAAGAATCCGTGGAAGATTTGCAAGAAGTGAAGAATGTGAGAGCAAGAGGGAATGA 846 0.4279 MYAETGLLFPYLHNLSQELHQLEEYCKTHKYNASMDDYVQCSAMSEYDLAAEGDLFKAPEPIIEEPIMDLDPMTAAISMISCGEDVSSQGLKSTDIDILQNDQFLSEVFYECKKDLLEKAAIESPLSEILEIKVPLLNIDENSIQENKPLSDMQLGKSVSSGSLSSMDWIRGAAMKPAFIDIPAMDFNAVYGMRRSFSEGDIKTLGNGNMNIVQSPLERPFLISNCTSEERFQKLSRYRNKRTKRNFGRKIKYACRKALADSQPRIRGRFARSEECESKRE 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3100g00001 281 ProSiteProfiles CCT domain profile. 231 273 IPR010402 GO:0005515
Vium3100g00001 281 Pfam CCT motif 231 273 IPR010402 GO:0005515
Vium3100g00001 281 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 146 275 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3100g00001 Vium-Chr3100 1858 6533 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3100g00001 227 278 C2C2-CO-like Transcription Factor Family AT5G57660 50.000 2.04e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium3100g00001 CCT 3.1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3100g00001 - - gmx:100814332 496.508