Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium30g00001 ATGCATTGCTACAAGATAGATATTACTCTGATGAAGCAAGTGCAATTCATCCCATTCCTATCACTTTGTTTTGTTTTCTATTGTCCATTGCTAGTGATCTCTATAAATCCTTCTTTCAACGATGATGTGTTGGGGTTGATTATGTTCAAGGCTGGTCTAGAAGACCCAAAAGGAAAACTCTCTACGTGGAATGAAGATGATTATAGTCCCTGCAACTGGGTTGGTGTCAAATGTGACCCTGTAAACAATAGGGTATCTTCTCTTGTTCTTGATGGATTCTCACTTTCTGGTCATATTGATAGAGGACTTTTGAGACTGCAGTTCCTTCAGATTCTGTCCCTTTCGAGGAACAATTTCACAGGGACCATAGCTCCTGACCTTCTCGGCATTGGTGATTTACAAGTAGTTGATTTGAGTGAGAACAACCTCTCTGGGCTAATTCCAGATGAGATTTTCCAGCAATGTTGGTCTCTGAGAGTACTATCATTTGCCAACAACAACCTCGCAGGTAAGATTCCTGATTCATTGAGCTCCTGCTACTCTTTGGCAGTTGTGAACTTTTCCTCTAATCAGATACATGGGGAACTTCCATCTGGAATGTGGTTTTTGAGGGGACTTCAATCAATTGATCTTTCAAACAACTTGCTGGAGGGAGAGATTCCAGAAGGAATTCAGAATCTGATTGATTTAAGGGAATTGAGGCTGGGGAAGAACCTCTTCACTGGTAGGATTCCTGAGCATATTGGTGACTGCTTGCTTTTGAAGTTGGTTGATTTCAGCAGTAATTCTCTCTCTGGGAGACTTCCTGAATCAATGCAAAAGCTCACCTCATGCACATTTCTCAGCTTGCAAGGCAATTCATTCACAGGTGGCATTCCACATTGGATTGGAGAAATGAAAAGTCTAGATACATTGGATCTTTCTACAAACAGATTTTCTGGTTGGATTCCAAAGTCAATAGGAAATCTTGACTTGCTGAGTAGGTTGAATCTTTCAAGGAATCAGATCACAGGAAACCTGCCAGAGTTGATGGTGAACTGCATTAAGCTTTTGACTCTTGACATCAGCCACAATCACTTGTCAGGCCATCTTCCTTCATGGATATTTCGGATGGGTTTACAAAGTATCTCTCTTTCTGGGAATGGCTTCAGTGAGGGAAATTATCCCTCACTTACTTCCATTCCTGTATCTTTTCATGGCCTTCAGGTTTTGGATTTGTCATCAAATGCATTTTTTGGCCAACTTCCATCTGGAATTGGAGGTCTAGGTAGCTTGCAAGTCTTGAATTTGTCCACCAACAATATCTCAGGTTCTATTCCTGTGAGTATAGGAGACCTTAAATCTTTGTACAATCTTGACTTAAGTGGCAACAAGCTTAATGGAAGCGTTCCTTCTGAAATAGAAGGAGCAACATCACTCAGTGAAATGAGGCTACAAAAGAACTTCCTACGTGGGAGAATTCCAGCCCAAATTGACAAGTGTTCAGAACTAATATTTCTGAATTTATCTCACAACAAGCTTATTGGCTCAATCCCTTCAGCCATAGCAAACCTAACCAATCTTCAGGATGTAGATTTCTCATGGAATGAACTCTCTGGAAGCTTACCAAAGGAGCTGACAAATCTCTCAAACCTTTTCTCCTTTAATGTTTCACACAACCACCTTCAAGGTGAGCTACCAGTGGGTGGCTTCTTCAACACCATCTCTCCTTCATCTGTCTCTGGTAATCCATTGTTATGTGGTTCTGTTGTTAATCACTCATGCCCTTCTGTTCATCCAAAGCCTATTGTCCTAAACCCCAATTCTTCATACTCCAACTCTGGCTCTTCATTACAGAACAATCACCATAAGATTATGCTAAGTATCTCTGTTCTCATTGCTATTGGTGCTGCTATTTTTATTGTCATTGGTGTGGTGGTTGTTACTGTTCTAAATATCCATGTGAGGTCTTCAATGCCTCTTTCTGCTACTCCATTTATATTCTCTGGTGGTGAGGACTATAGCGGTTCACCCGGGAATGATCCAAACCATGGCAAGCTCGTGATGTTTTATGGTGATGCAGAATTTGCTGATGGTGCTCATAATCTTCTTAACAAAGACAGTGAAATAGGTCGCGGTGGATTTGGAGTTGTTTATTGCACTGTCCTCAGAGATGGTCATTGTGTTGCAATCAAGAAGCTTACAGTGTCCACCTTAACCAAGTCACAAGAAGACTTTGAGAGGGAGGTTAAAATGCTTGGGAAGATCAAGCACCAAAATCTTGTGGCACTTGAAGGTTATTATTGGACTCCATCCTTGCAGCTCCTAATTTATGAGTACCTAGCCAGAGGGAGTTTGCAGAAGCTTCTACATGATGATGATAGCAGCAAAAATATACTTTCTTGGAGAAAAAGGTTCAAGATCATACTTGGAATTGCAAGAGGGTTGGCCTATTTGCATCAAATGGAATTGATTCATTACAATTTAAAGTCAACAAACGTGTTCATAGATTGTTCTGATGAGGCAAGAATAGGAGACTTTGGCTTGGTGAGGCTACTTCCAATGCTAGACCCTTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTCGGCTACATGGCTCCTGAATTTGCTTGCCGCACAGTGAAGATAACTGAGAAGTGTGACATATACAGTTTTGGAATTTTGATTTTGGAGGTGGTGACAGGAAAAAGACCAGTGGAATACATGGAGGATGATGTGGTTGTTCTTTGTGACAAGGTGAGAAGTGCATTGGATGATGGCAAAGTGGAGCAATGTGTTGATGAAAATCTAAAGGGTAATTTTGCTGCAGAAGAAGCAGTTCCTGTGATAAAACTGGGGTTGGTTTGTGCATCACAAGTTCCCTCAAAGCGACCAGATATGGCTGAGGTTATCAACATATTGGAGTTGATCCAATGCCCTTCTGAAGAACAAGAAGAAATACAATGA 2946 0.4111 MHCYKIDITLMKQVQFIPFLSLCFVFYCPLLVISINPSFNDDVLGLIMFKAGLEDPKGKLSTWNEDDYSPCNWVGVKCDPVNNRVSSLVLDGFSLSGHIDRGLLRLQFLQILSLSRNNFTGTIAPDLLGIGDLQVVDLSENNLSGLIPDEIFQQCWSLRVLSFANNNLAGKIPDSLSSCYSLAVVNFSSNQIHGELPSGMWFLRGLQSIDLSNNLLEGEIPEGIQNLIDLRELRLGKNLFTGRIPEHIGDCLLLKLVDFSSNSLSGRLPESMQKLTSCTFLSLQGNSFTGGIPHWIGEMKSLDTLDLSTNRFSGWIPKSIGNLDLLSRLNLSRNQITGNLPELMVNCIKLLTLDISHNHLSGHLPSWIFRMGLQSISLSGNGFSEGNYPSLTSIPVSFHGLQVLDLSSNAFFGQLPSGIGGLGSLQVLNLSTNNISGSIPVSIGDLKSLYNLDLSGNKLNGSVPSEIEGATSLSEMRLQKNFLRGRIPAQIDKCSELIFLNLSHNKLIGSIPSAIANLTNLQDVDFSWNELSGSLPKELTNLSNLFSFNVSHNHLQGELPVGGFFNTISPSSVSGNPLLCGSVVNHSCPSVHPKPIVLNPNSSYSNSGSSLQNNHHKIMLSISVLIAIGAAIFIVIGVVVVTVLNIHVRSSMPLSATPFIFSGGEDYSGSPGNDPNHGKLVMFYGDAEFADGAHNLLNKDSEIGRGGFGVVYCTVLRDGHCVAIKKLTVSTLTKSQEDFEREVKMLGKIKHQNLVALEGYYWTPSLQLLIYEYLARGSLQKLLHDDDSSKNILSWRKRFKIILGIARGLAYLHQMELIHYNLKSTNVFIDCSDEARIGDFGLVRLLPMLDPCVLSSKIQSALGYMAPEFACRTVKITEKCDIYSFGILILEVVTGKRPVEYMEDDVVVLCDKVRSALDDGKVEQCVDENLKGNFAAEEAVPVIKLGLVCASQVPSKRPDMAEVINILELIQCPSEEQEEIQ 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium30g00001 981 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 691 773 - -
Vium30g00001 981 Gene3D Ribonuclease Inhibitor 200 254 IPR032675 -
Vium30g00001 981 Gene3D Ribonuclease Inhibitor 255 320 IPR032675 -
Vium30g00001 981 ProSitePatterns Protein kinases ATP-binding region signature. 703 726 IPR017441 GO:0005524
Vium30g00001 981 Gene3D Phosphorylase Kinase; domain 1 687 773 - -
Vium30g00001 981 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 774 976 - -
Vium30g00001 981 Gene3D Ribonuclease Inhibitor 40 199 IPR032675 -
Vium30g00001 981 PRINTS Leucine-rich repeat signature 133 146 - -
Vium30g00001 981 PRINTS Leucine-rich repeat signature 446 459 - -
Vium30g00001 981 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 319 592 - -
Vium30g00001 981 SUPERFAMILY Protein kinase-like (PK-like) 697 974 IPR011009 -
Vium30g00001 981 SMART LRR_sd22_2 446 469 - -
Vium30g00001 981 SMART LRR_sd22_2 299 325 - -
Vium30g00001 981 SMART LRR_sd22_2 518 544 - -
Vium30g00001 981 SMART LRR_sd22_2 203 226 - -
Vium30g00001 981 Pfam Leucine Rich Repeat 206 227 IPR001611 GO:0005515
Vium30g00001 981 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 41 967 - -
Vium30g00001 981 SUPERFAMILY RNI-like 258 566 - -
Vium30g00001 981 SMART LRR_typ_2 518 541 IPR003591 -
Vium30g00001 981 SMART LRR_typ_2 203 226 IPR003591 -
Vium30g00001 981 SMART LRR_typ_2 446 470 IPR003591 -
Vium30g00001 981 SMART LRR_typ_2 398 421 IPR003591 -
Vium30g00001 981 SMART LRR_typ_2 323 347 IPR003591 -
Vium30g00001 981 SMART LRR_typ_2 422 445 IPR003591 -
Vium30g00001 981 SMART LRR_typ_2 130 154 IPR003591 -
Vium30g00001 981 SMART LRR_typ_2 106 129 IPR003591 -
Vium30g00001 981 SMART LRR_typ_2 542 566 IPR003591 -
Vium30g00001 981 SMART LRR_typ_2 227 251 IPR003591 -
Vium30g00001 981 SMART LRR_typ_2 348 371 IPR003591 -
Vium30g00001 981 SMART LRR_typ_2 299 322 IPR003591 -
Vium30g00001 981 Gene3D Ribonuclease Inhibitor 321 594 IPR032675 -
Vium30g00001 981 CDD STKc_IRAK 703 970 - -
Vium30g00001 981 ProSiteProfiles Protein kinase domain profile. 697 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium30g00001 981 SUPERFAMILY L domain-like 65 318 - -
Vium30g00001 981 Pfam Leucine rich repeat 281 336 IPR001611 GO:0005515
Vium30g00001 981 Pfam Leucine rich repeat 400 459 IPR001611 GO:0005515
Vium30g00001 981 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Vium30g00001 981 Pfam Protein kinase domain 698 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium30g00001 981 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 40 318 - -
Vium30g00001 981 Gene3D Transferase(Phosphotransferase) domain 1 774 978 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium30g00001 Vium-Chr30 62758 67151 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium30g00001 32 980 Receptor kinase-like Gene Family AT3G56370 59.853 0.0 1101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vium30g00001 Pkinase 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium30g00001 - - gmx:100791204 1724.14