Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium309g00030 ATGGCTTTGTTGTTTCTTTACAGGAGACCAGAAGGAAACCCGTTAGATCTTAACAATTTGCCTGATGAGTACTCTAGAGATGGCAAACAAGTCCTCGAAGACCATACCTCTTCACCGGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTTAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACGGAGACACTGAACCAGGCTCGACAACTGGTCTTTCGCAGTGATCATACCCTTACTGCACAAGGTGCACCTCACTTAGGATGCTGCCAACCGATAGGAACGGGTGGTTATCACCCATCGGGAGATCCATCGGCACCTCTGAGATTTCCGAGGTACTTCTCAGGTTCATCCTCAACTCACATGCCGCCAGCAGCACCGGCACCAGTAGCACCACAGCCATACCTGTATGCCTCACCTACAAGGCCAGTGTCTTTTGGGTCATCACACTTCCCTCATCAGCATGCGGTGAATGATTACTATGTGGGTCATGTGATGAGTGGGAGTCACGGACATTATGTGGGAGGAGGAGGAGGAGAGAGCACAAGTAGTTACACATGCATTGGTGCACCGGTGGGACAAGGCGGTGGGTTTGGCAGTGGTGGTGGTGGTGGTAAGGACGGGTCACTGCCACTGCATAATAATCAGGAGGAAGGTTTGAGTTGGGGAAGGGGGTATCCGGCTGGAGCACAGCATCGTTTGGATCCTCCGTCAGCGATCAATCGGTTTCAAGATGGTTTCTAA 819 0.5177 MALLFLYRRPEGNPLDLNNLPDEYSRDGKQVLEDHTSSPGCRKKKSGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNQARQLVFRSDHTLTAQGAPHLGCCQPIGTGGYHPSGDPSAPLRFPRYFSGSSSTHMPPAAPAPVAPQPYLYASPTRPVSFGSSHFPHQHAVNDYYVGHVMSGSHGHYVGGGGGESTSSYTCIGAPVGQGGGFGSGGGGGKDGSLPLHNNQEEGLSWGRGYPAGAQHRLDPPSAINRFQDGF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium309g00030 272 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Vium309g00030 272 MobiDBLite consensus disorder prediction 10 53 - -
Vium309g00030 272 SUPERFAMILY beta-beta-alpha zinc fingers 51 102 IPR036236 -
Vium309g00030 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Vium309g00030 272 MobiDBLite consensus disorder prediction 223 272 - -
Vium309g00030 272 PANTHER ZINC FINGER PROTEIN JAGGED 27 230 IPR045320 GO:0003700
Vium309g00030 272 MobiDBLite consensus disorder prediction 22 53 - -
Vium309g00030 272 FunFam Zinc finger protein STAMENLESS 1 33 108 - -
Vium309g00030 272 Gene3D Classic Zinc Finger 36 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium309g00030 Vium-Chr309 323960 326310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium309g00030 8 221 C2H2 Transcription Factor Family AT1G13400 43.379 1.60e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium309g00030 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium309g00030 - - gmx:102664687 410.223