Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium309g00029 ATGAGACCAGAAGGAAACCCGTTAGATCTTAACAATTTGCCTGATGAGTACTCTAGAGATGGCAAACAAGTCCTCGAAGACCATACCTCTTCACCGGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTTAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACGGAGACACTGAACCAGGCTCGACAACTGGTCTTTCGCAGTGATCATACCCTTACTGCACAAGGTGCACCTCACTTAGGATGCTGCCAACCGATAGGAACGGGTGGTTATCACCCATCGGGAGATCCATCGGCACCTCTGAGATTTCCGAGGTACTTCTCAGGTTCATCCTCAACTCACATGCCGCCAGCAGCACCGGCACCAGTAGCACCACAGCCATACCTGTATGCCTCACCTACAAGGCCAGTGTCTTTTGGGTCATCACACTTCCCTCATCAGCATGCGGTGAATGATTACTATGTGGGTCATGTGATGAGTGGGAGTCACGGACATTATGTGGGAGGAGGAGGAGGAGAGAGCACAAGTAGTTACACATGCATTGGTGCACCGGTGGGACAAGGCGGTGGGTTTGGCAGTGGTGGTGGTGGTGGTAAGGACGGGTCACTGCCACTGCATAATAATCAGGAGGAAGGTTTGAGTTGGGGAAGGGGGTATCCGGCTGGAGCACAGCATCGTTTGGATCCTCCGTCAGCGATCAATCGGTTTCAAGATGGTTTCTAA 798 0.5213 MRPEGNPLDLNNLPDEYSRDGKQVLEDHTSSPGCRKKKSGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNQARQLVFRSDHTLTAQGAPHLGCCQPIGTGGYHPSGDPSAPLRFPRYFSGSSSTHMPPAAPAPVAPQPYLYASPTRPVSFGSSHFPHQHAVNDYYVGHVMSGSHGHYVGGGGGESTSSYTCIGAPVGQGGGFGSGGGGGKDGSLPLHNNQEEGLSWGRGYPAGAQHRLDPPSAINRFQDGF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium309g00029 265 Gene3D Classic Zinc Finger 29 103 - -
Vium309g00029 265 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Vium309g00029 265 SUPERFAMILY beta-beta-alpha zinc fingers 44 95 IPR036236 -
Vium309g00029 265 MobiDBLite consensus disorder prediction 15 46 - -
Vium309g00029 265 FunFam Zinc finger protein STAMENLESS 1 26 101 - -
Vium309g00029 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Vium309g00029 265 MobiDBLite consensus disorder prediction 1 46 - -
Vium309g00029 265 PANTHER ZINC FINGER PROTEIN JAGGED 20 223 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium309g00029 Vium-Chr309 323960 326589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium309g00029 4 214 C2H2 Transcription Factor Family AT1G13400 42.593 1.65e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium309g00029 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium309g00029 - - gmx:102664687 399.053