Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium309g00023 ATGAGGCTTTCCATACTGCAACCTCAGCCGCAGCGCTGTCACCACCCGATAAAGCGGTGGCCTCGCATGGACGCTTCCTTCCACCGCCGCAAGGACAAGGTCGTTGTCATCATGGGCGCCACCGGCTCCGGCAAGTCCCGTCTCTCCATCGACCTCGCCACCCTCTTCCCCGTCTCCGAAATCATCAACTCCGACAAAATGCAAGTCTACCGCGGACTCGACATCACCACCAACAAGATCCCCCTCGCGCAGCGCCGCGGTGTCCCTCACCACCTTCTCGGCGACGTCGATCCCTCCCTACCGGAGTTCTCCCCCGCCGACTTCCGTCGCCGCGCTGGCCACATCGTCGACGACATCAGCAGCCGGGATTGCCTCCCCATCGTCGTCGGCGGCTCTAACTCCTTCGTCCACGCGCTTCTCGTGGAAGACTTCCAGCCTGACTCCAACGTCTTCCAACACGCCGAGCGGCTTATATCCTCCGAGTTGAGGTACAAGTGTTGCTTCCTCTGGGTCGACATAGCTTTCCCCGTGCTATCGCAATACTTGTGCCACCGAGTCGACGACATGCTCCAATCGGGGATGGTCCAGGAGTTGGCTCAGTTCTTCGACCCCGAGGCTTCCCGTCGAACCGGGTCCGGTCTCAGAAAAGCCATTGGGGTTCCCGAGTTCGACCGCTATTTTAATATGTACCCACCCTGGGCCGGCCCCGCGGGCCCGGGCGAGGATCCTCTGCGGAAGCGTGCGTACGAGGAAGCGGTGCGGGCGATCAAGGATAACACGTGCGAGTTGGCGGAGCGTCAGATGGAGAAGATCGAACGGTTGATGCGTGCCGGGTGGGACCTACGGAGGATCGACGCTACGGAAGCGTTTGGGGTGGTGCTGACGTCAGGGTCCAACAATGGGTCCGATGTATGGGAGAGACAGGTGTTGGAACCAAGCGTGAAGATTGTGAGACGCTTCTTGATGGAGTAG 972 0.606 MRLSILQPQPQRCHHPIKRWPRMDASFHRRKDKVVVIMGATGSGKSRLSIDLATLFPVSEIINSDKMQVYRGLDITTNKIPLAQRRGVPHHLLGDVDPSLPEFSPADFRRRAGHIVDDISSRDCLPIVVGGSNSFVHALLVEDFQPDSNVFQHAERLISSELRYKCCFLWVDIAFPVLSQYLCHRVDDMLQSGMVQELAQFFDPEASRRTGSGLRKAIGVPEFDRYFNMYPPWAGPAGPGEDPLRKRAYEEAVRAIKDNTCELAERQMEKIERLMRAGWDLRRIDATEAFGVVLTSGSNNGSDVWERQVLEPSVKIVRRFLME 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium309g00023 323 Gene3D - 31 321 IPR027417 -
Vium309g00023 323 Pfam IPP transferase 159 269 - -
Vium309g00023 323 Pfam IPP transferase 68 145 - -
Vium309g00023 323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 205 IPR027417 -
Vium309g00023 323 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 31 321 IPR039657 -
Vium309g00023 323 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 175 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium309g00023 Vium-Chr309 234315 236423 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium309g00023 163 321 C2H2 Transcription Factor Family AT2G27760 30.387 9.49e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium309g00023 K10760 - gmx:100813761 511.531