Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium309g00005 ATGGGAATGGGTTCAAAAATGGAAGGACCGTCTACCCCAGCCAATCGACGTGACCCATACGAGGTATTGTCCGTGTCAAGGGATTCAACCGATCAAGAAATTAAAACGGCGTACAGAAAGCTTGCTCTTAAGTATCACCCTGACAAAAATGCCAGCAATCCTGAAGCTTCGGAGCTATTTAAAGAGGTTGCATATTCTTATAGTATCTTGTCTGACCCAGAAAAGAGAAGGCAGTATGACAGTGCTGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAGATTGATTTGTCTAATCTTGGGACAGTGAACACAATGTTTGCAGCTTTATTCAGTAAACTGGGCGTCCCTATCAAGACAACCATTTCAGCTAATGTTCTGGAAGAAGCTCTTAACGGAACTGTTACAGTTAGACCCCTTCCAATTGGAACATCAGTTAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGTGTCACAATAAACGAACAACAAGCTGAGTCAGGCATTGTAATAAGAGTTACTTCAACAGCACAAAGCAAATTCAAATTGCTCTACTTTGAACAAGACGTGAATGGAGGCTATGGTCTGGCATTGCAGGAAGATAGTGAGAAGACTGGCAAGGTGACATCTGCAGGAATGTATTTCTTACATTTTCAAGTGTATAGAATGGATTCAACAGTGAATGCGTTAGCGATGGCCAAGGATCCTGAAGGGGCCTTCTTTAAAAGGTTGGAAGGTCTTCAGCCTTGTGAAGTCTCAGAACTAAAGGCTGGCACTCATATATTTGCGGTTTATGGTGATAACTTCTTTAAGACTGCTAGCTATACTATTGAGGCAGTATGTGCAAAATCGTATGAAGATACCACCCAAAAACTGAAGGATGTTGAAGCTCAGATTTTAAGAAAGAGGAATGAGCTACGCCAATTTGAAGCAGAATATAGAAAGGCATTGGCACGCTATCAGGAAGTGACAGACAGATACACAAAAGAAAAACAATCTGCAACTAGCAGACCCTATCACTGTCATTGA 1038 0.4171 MGMGSKMEGPSTPANRRDPYEVLSVSRDSTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEQQAESGIVIRVTSTAQSKFKLLYFEQDVNGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTASYTIEAVCAKSYEDTTQKLKDVEAQILRKRNELRQFEAEYRKALARYQEVTDRYTKEKQSATSRPYHCH 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium309g00005 345 ProSiteProfiles dnaJ domain profile. 18 83 IPR001623 -
Vium309g00005 345 Gene3D DnaJ domain 4 100 IPR036869 -
Vium309g00005 345 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 4 338 - -
Vium309g00005 345 CDD DnaJ 18 72 IPR001623 -
Vium309g00005 345 PRINTS DnaJ domain signature 75 94 IPR001623 -
Vium309g00005 345 PRINTS DnaJ domain signature 20 38 IPR001623 -
Vium309g00005 345 PRINTS DnaJ domain signature 38 53 IPR001623 -
Vium309g00005 345 PRINTS DnaJ domain signature 55 75 IPR001623 -
Vium309g00005 345 FunFam Chaperone protein dnaJ 16 3 100 - -
Vium309g00005 345 Coils Coil 288 329 - -
Vium309g00005 345 SUPERFAMILY Chaperone J-domain 14 88 IPR036869 -
Vium309g00005 345 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Vium309g00005 345 MobiDBLite consensus disorder prediction 1 28 - -
Vium309g00005 345 Pfam DnaJ domain 18 80 IPR001623 -
Vium309g00005 345 SMART dnaj_3 17 75 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium309g00005 Vium-Chr309 51209 57261 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium309g00005 11 90 C2H2 Transcription Factor Family AT1G74250 42.353 3.83e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium309g00005 - - gmx:100811270 650.588