Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium309g00001 ACGCTCATTTCAATAAATCCCTCTCTCCATAACAATAACTCCACCCAAATTATAACTCTCCTTCCATTACCGTTAAGCCCTTTCATTTTCACATTAATTCCACATTTAACACCAACCTTTTTACACAGCCTCAAACGCAAACACTCTTCTCTCGCTACTTTCTCTCTCTCTCTCTCCCTCTCTCTGTCTCTGAGAGTAACAATGGCAGCAAGACTCTCTCACCTTGCTCCTTTTCTGGTTTTTCATTTTCTTCTTCTCACGGTTCAAGGTTCCAGTAACCCAGATTTTGACGCTCTCGTGGCCTTCAAAACCGCTTCAGACACTTCCCAGAAGCTCACAACGTGGAATACCAGCAGCACCAACCCCTGTTCCTGGAGCGGCGTGTCGTGCATTGGCGACCGTGTCTCGCGACTCGTTCTCGAAAACCTCGACCTCCAAGGCTCCATTCATCCCTTGACTTCTCTAACTCAGCTCCGAGTTCTCAGTCTCAAAGGAAACCATTTCTCCGGTCCCGTTCCCGACCTCTCCAACCTCACCGCCCTCAAACTCCTCTTCTTGTCTCGCAACGCCTTCTCCGGCGAGTTTCCAGGCACCGTCACGTCGCTCTTTCGCCTCTACCGACTCGATCTGTCCAACAACAACTTCTCCGGCGAGATTTCGGCGACGGTCTCCCACTTGACCCACCTCCTAACTCTCCGCCTCGACGGAAACAAGTTCTCCGGCCACATTCCTGCCTTCAACCTCCCCGACCTCCAAGAATTCAACGTCTCCGGCAACCGCCTCTCCGGCGAGATACCCAAAGCGTTATCGAGTTTCCCCGAATCATCGTTCGGGCAAAACCCGTTTCTCTGTGGTGCTCCAGTTAAAAAATGCGCATCCGACCCAACCAAACCCGGATCAGAAGGCGCCATTGCTTCGCCGTTGTTACCACAGAACCATAACAACCCAACACCTACGGTATCATCTTCACCAAGCTCAATGCCAAAAACGTCAACACCAACGTCAAGTAGTAAAAGCCACGAGAAGGGTGCTTCTAAAATAAGCCCGGTGGCGCTTATAGCTATTATAGTTGGTGATGTTTTGGTTCTTGCAATAGTGTCTTTGCTTTTGTATTGTTACTTCTGGAGAAACTACAAGTTAAAAGAAGGGAAGGGAACGAAGCTTTTTGAGAGTGAGAAGATTGTGTATTCGTCAAGTCCGTACCCTGCTCAGGGAGGGTTTGAGAGGGGTCGCATGGTGTTCTTCGAGGGTGAGAAAAGGTTTGAACTAGAGGACTTGCTGCGAGCATCTGCGGAAATGCTTGGAAAGGGAGGGTTTGGGACCGCGTACAAGGCAGTGCTCGATGATGGGAACGTGGTTGCGGTGAAGAGACTGAAGGACGCGCAGATTACAGGGAAGAGGGAATTCGAGCAACACATGGAGGTGTTGGGAAGGTTAAGGCATCCAAATGTCGTTAGTTTGAGAGCTTACTATTTTGCGCGCGAGGAGAAGTTGCTGGTCTATGATTACATGCCCAATGCCACCTTGTTCTGGCTCCTTCACGGGAACCGAGGACCCGGACGAACCCCACTGGACTGGACCACGAGGCTGAAAATAGCAGCGGGAGCGGCGAGAGGTGTGGCTTTCATTCATAACTCGTGCAAGTCCATTAGACTCACCCACGGTAACATCAAATCCACCAACGTCTTACTCGACAAGCAGGGCAACGCGCACGTGTCTGATTTTGGGCTCTCGGTTTTCGCGGGGCCAGGCCCATTGGGTGGGAGGCCCAACGGCTATCGCGCGCCGGAAGCATCGGATGGTCGAAAACAGACCCAGAAGTCTGACGTGTACTCTTTCGGTGTGCTCCTACTGGAGATTCTAACTGGGAAGTGCCCTTCCGTGGTGGAGAGTGCAGGTAGTGCTTACGGTGGGGTGGTGGACCTGCCCAGGTGGGTCCAGTCAGTGGTGAGGGAAGAATGGACAGCTGAAGTGTTTGATTTGGAACTGATGAGGTATAAGGATATTGAGGAAGAGATGGTGGGGCTGCTTCAGATTGCGATGACGTGTACCGCAGCTGCACCTGATCAACGGCCCAGGATGAGCCACGTGGTGAAGATGATTGAGGAGTTGCGTGGGGTCGAGGTGTCGCCGTGTCATGACTCGACGGACTCTGTTTCCGAGTCACCTTCCATGTCTGAAGATGCGTGTGGAACGAGTCAGTGA 2205 0.5184 TLISINPSLHNNNSTQIITLLPLPLSPFIFTLIPHLTPTFLHSLKRKHSSLATFSLSLSLSLSLRVTMAARLSHLAPFLVFHFLLLTVQGSSNPDFDALVAFKTASDTSQKLTTWNTSSTNPCSWSGVSCIGDRVSRLVLENLDLQGSIHPLTSLTQLRVLSLKGNHFSGPVPDLSNLTALKLLFLSRNAFSGEFPGTVTSLFRLYRLDLSNNNFSGEISATVSHLTHLLTLRLDGNKFSGHIPAFNLPDLQEFNVSGNRLSGEIPKALSSFPESSFGQNPFLCGAPVKKCASDPTKPGSEGAIASPLLPQNHNNPTPTVSSSPSSMPKTSTPTSSSKSHEKGASKISPVALIAIIVGDVLVLAIVSLLLYCYFWRNYKLKEGKGTKLFESEKIVYSSSPYPAQGGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQITGKREFEQHMEVLGRLRHPNVVSLRAYYFAREEKLLVYDYMPNATLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSIRLTHGNIKSTNVLLDKQGNAHVSDFGLSVFAGPGPLGGRPNGYRAPEASDGRKQTQKSDVYSFGVLLLEILTGKCPSVVESAGSAYGGVVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMTCTAAAPDQRPRMSHVVKMIEELRGVEVSPCHDSTDSVSESPSMSEDACGTSQ 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium309g00001 734 Gene3D Ribonuclease Inhibitor 89 154 IPR032675 -
Vium309g00001 734 Gene3D Ribonuclease Inhibitor 155 298 IPR032675 -
Vium309g00001 734 FunFam pollen receptor-like kinase 1 401 503 - -
Vium309g00001 734 MobiDBLite consensus disorder prediction 713 734 - -
Vium309g00001 734 Pfam Leucine rich repeat N-terminal domain 93 130 IPR013210 -
Vium309g00001 734 Pfam Protein tyrosine and serine/threonine kinase 432 700 IPR001245 GO:0004672|GO:0006468
Vium309g00001 734 CDD STKc_IRAK 434 704 - -
Vium309g00001 734 MobiDBLite consensus disorder prediction 295 342 - -
Vium309g00001 734 ProSiteProfiles Protein kinase domain profile. 428 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium309g00001 734 MobiDBLite consensus disorder prediction 307 342 - -
Vium309g00001 734 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 504 711 - -
Vium309g00001 734 FunFam Leucine-rich repeat receptor-like protein kinase 92 245 - -
Vium309g00001 734 Gene3D Transferase(Phosphotransferase) domain 1 504 721 - -
Vium309g00001 734 MobiDBLite consensus disorder prediction 710 734 - -
Vium309g00001 734 ProSitePatterns Protein kinases ATP-binding region signature. 434 456 IPR017441 GO:0005524
Vium309g00001 734 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 81 706 IPR046959 -
Vium309g00001 734 Gene3D Phosphorylase Kinase; domain 1 408 503 - -
Vium309g00001 734 SUPERFAMILY L domain-like 104 288 - -
Vium309g00001 734 SUPERFAMILY Protein kinase-like (PK-like) 432 701 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium309g00001 Vium-Chr309 15569 18647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium309g00001 95 734 Receptor kinase-like Gene Family AT1G68400 67.477 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium309g00001 PK_Tyr_Ser-Thr 1.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium309g00001 - - vum:124834036 1410.2