Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3098g00009 ATGACTGAAACTAAGTCAACCAGTAAGATTGTCAAGAAGCAGGACTCAAAAAAAGTTTCTGGTGTCAGCAATCAGTCTTCTAGGAAGCAACATCGCAAAGGAGAAAACCCTGTGCGGTTTGTACCAGTTCCTGACCCACCTAGTGATTTTGGACATTCAAACTCCTGGATCTGTAAGAATTCTGCTTGTCGAGCAGTTCTCTCTAAAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGATGATAACAAGGATCCCAGCCTTTGGTTGGTATGCACATGTGAATCTGCTCAAGGGGACTCCTGTGGATTGTCTTGCCATATTGAGTGTGCTCTTCAACATGAAAAAGTTGGAGTTGTTGATCATGGACAACTGATGCAATTAGATGGTGGTTATTGTTGTGCATCCTGCGGTAAAGTTACTGGGATACTTGGATGTTGGAAGAAGCAGCTAAGCATAGCAAAAGATGCTCGACGAGTAGATTTACTATGTTTCAGGATATATTTGAGCTACAGGCTTTTGGATGGTACTTCAAGATTTAAAGAATTGCATGAAATGGTAAAAGAAGCAAAGGCTAAACTGGAAACTGAAGTTGGTCCAGTTAATGGGGTTTCTGCCAAAATGGCACGTGGGATTGTCAGCAGACTCCCTATTGCTAGTGATGTCCAAAAACTCTGCTCTCTTGCTATTGAGAAAGCTGACGAGTGGTTGGCCACTGTTCCCAATGTAAATCCAGAATCCAGAGAGGGTTCACTTCCTGCTGCCTGCAAGGTTGTGTTTGAAGAGGTGACGTCTTCCTCAGTCAAAATAATTTTAATTGAAATGTCAAATGCATCTTCTGGGGACGTTAAGGGATACAAGCTATGGTATTACAAGAGCAGGGAGGAATCACACACTAAAGATCCTGTTTGTGTTTTTCCCAAATCTCAGAGAAGGATTTTGTTATCCAACCTCCAACCTTGCACGGAATATACATTTCGGATTGTATCTTTTACTGATACAGGTGACCTGGGTCACTCTGAGACCAAGTGTTTCACCAAGAGCGTTGAGATATTGGAAAAGAATTCATCTTCATCAGTGGCCGTGAATCAAAAAAAGAACCTTCAAGCTGAGTGCAATTCTTCTGGTTCCAAATTGGAGCCCAATCCCACATCAGCTGACTCTGGATTTAAGGTTCGAGACCTTGGGAAAATCTTGCATCTTACTTGGGCTCAAGAACAAGGTAGCTTTGAGGGGTTTTGCTGTGCTGACAAGAGAAACTGCTGTGGGCAGAGTGAAACTATCAAGCCTAGCAAACCACAAGAGCAGTTGCCTTCAGTTTCACGTGACCTCGATCTAAATGTAGTTTCAGTGCCTGATTTAAACGAAGAGCTGACACCTCCGTTTGAGTCTTCCAGGGATGAAGATAACGGTTGTACCTTGCAGCAGGCTGTTGAGGCTGATGATGATGCTGCTTCTCATGATTTAGACAAAAATTTAGCAAGATCACATGGTAGTGGTGGTTCACAAACATGGAACCATGGACAAACCGGAGAAGTTCCTGCTGTTGACTCACGTGGAGACGCAAGTAGGAAAAGGAAAGCTAGCACAAATGAAGAGACACATGATTGTGACAGCACTTTGATAAATGGCTCTCCTTTACGCCCTTCTGATGGTCCATTCTCTTTGGATGAAAACTTTGAGTATTGTGTGAAAGTAATTCGCTGGCTAGAATGCCAAGGTCATATCAAGCAGGAATTTAGGTTGAAATTGCTGACATGGTTTAGTTTGAGGTCGACAGAGCAAGAACGAAGGGTGGTAAATACTTTCATTCAAACTCTGATTGATGATCCTAGTAGTTTGGCAGGGCAGCTAGTTGACTCATTTTCTGATATTATATCCAACAAGAGGCCAAGAAATGGGTTCTGCAACAAGACCGTGACATCAAATTAA 1947 0.4263 MTETKSTSKIVKKQDSKKVSGVSNQSSRKQHRKGENPVRFVPVPDPPSDFGHSNSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTCESAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLSIAKDARRVDLLCFRIYLSYRLLDGTSRFKELHEMVKEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDVQKLCSLAIEKADEWLATVPNVNPESREGSLPAACKVVFEEVTSSSVKIILIEMSNASSGDVKGYKLWYYKSREESHTKDPVCVFPKSQRRILLSNLQPCTEYTFRIVSFTDTGDLGHSETKCFTKSVEILEKNSSSSVAVNQKKNLQAECNSSGSKLEPNPTSADSGFKVRDLGKILHLTWAQEQGSFEGFCCADKRNCCGQSETIKPSKPQEQLPSVSRDLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAVEADDDAASHDLDKNLARSHGSGGSQTWNHGQTGEVPAVDSRGDASRKRKASTNEETHDCDSTLINGSPLRPSDGPFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCNKTVTSN 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3098g00009 648 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 643 IPR044514 GO:0010048|GO:0040029
Vium3098g00009 648 Pfam PHD - plant homeodomain finger protein 58 176 IPR032881 -
Vium3098g00009 648 ProSiteProfiles Fibronectin type-III domain profile. 259 356 IPR003961 GO:0005515
Vium3098g00009 648 MobiDBLite consensus disorder prediction 496 554 - -
Vium3098g00009 648 MobiDBLite consensus disorder prediction 1 16 - -
Vium3098g00009 648 Gene3D Immunoglobulins 244 355 IPR013783 -
Vium3098g00009 648 SUPERFAMILY Fibronectin type III 261 342 IPR036116 GO:0005515
Vium3098g00009 648 MobiDBLite consensus disorder prediction 1 44 - -
Vium3098g00009 648 Pfam Fibronectin type III domain 262 343 IPR003961 GO:0005515
Vium3098g00009 648 CDD FN3 262 351 IPR003961 GO:0005515
Vium3098g00009 648 MobiDBLite consensus disorder prediction 501 516 - -
Vium3098g00009 648 MobiDBLite consensus disorder prediction 523 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3098g00009 Vium-Chr3098 34188 43054 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3098g00009 54 639 PHD Gene Family AT3G24440 49.834 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3098g00009 - - gmx:100780157 1244.95