Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3093g00006 ATGGACCAGGCCGAATTAACCACCGAACTGGTTCTGAGTAGGGACATTCCATGGGAGACCTATATGTCCACGAAGCTCATCTCAAGCACCAGCCTTCAGCTCTTAAGGCGCTATGATCACCGATCAGAGAGTCACAGAGCACAGTTGCTCGATGATGATGGTCCCTCGTATGTTCGCGTGTTTGTTCGTGTTCTGCGTGATATTTTCAAAGAAGATACTGTAGAGTATGTTTTGGCACTGATAGATGAAATGCTTGCAGCAAACCCCAAGAGAGCAAGACTGTTTCATGACAGTACTCTTGCAGATGAAGATACTTATGAGCCTTTCCTAAGATTGCTCTGGAAAGGAAATTGGTTCATTCAAGAGAAAAGTTGTAAGATCCTTGCTTTAATTGTCAGTGTCAGGCCAAAAAATCAGAATGGTGTTGTGTCTAATGGAGAAGCATCAAATGGAAAGAAGCCATTTACCACTATTGATGATGTTTTGATAGGATTAGTAAAATGGCTTTGTGAACAGTTGAAGAAACCTTTTCATCCTACTCGTGGAGTCCCAACTGCTATCAATTGCCTAGCAACACTGCTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCAGGCAGATGGGGTCAAGTTACTTGTGCCATTGATTTCACCAGCATCCACACAACAGTCCATTCAGCTTCTTTATGAAACATGTCTGTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAATATTTGGCTACTTCAAGGACTCTTCCTCGACTTATTGATGTTGTTAAGAGCTCTACAAAAGAGAAGGTGGTTAGAGTTATTGTGCTGACTCTTAAGAACTTGATGTCAAAAGGGACATTGGGTGCTCAGATGGTTGACCTTCAGCTGCCACAAGTTGTCCAGAGTTTAAAGGCACAAGCATGGAGTGATGAGGACTTATTGGAGGCACTGAATTCTCTGGAAGAAGGGCTTAAGGATAATATTAAAAGACTAAGTTCTTTTGATATGTACAAGCAAGAAGTTCTCCTTGGCCATCTAGATTGGTCTCCCATGCACAAAGATCCCTTATTCTGGAGAGAAAATATAACCAACTTTGAAGAAAATGATTTCCAGATCCTAAGGGTCCTAATAACAATTTTGGACACTTCTAGTGATCCAAGGACTCTGGCAGTTGCTTGTTATGATCTTTCACAGTTTATCCAGCACCATCCTGCTGGACGGATAATTGTGACAGACCTCAAGGCCAAGGAACGGGTGATGAAGCTTATGAACCATGAAAATGCTGAAGTTACTAAGAATGCACTACTCTGCATCCAGCGGCTTTTCCTAGGTGCCAAGTACGCAAGTTTCTTGCAGGTTTAA 1359 0.4224 MDQAELTTELVLSRDIPWETYMSTKLISSTSLQLLRRYDHRSESHRAQLLDDDGPSYVRVFVRVLRDIFKEDTVEYVLALIDEMLAANPKRARLFHDSTLADEDTYEPFLRLLWKGNWFIQEKSCKILALIVSVRPKNQNGVVSNGEASNGKKPFTTIDDVLIGLVKWLCEQLKKPFHPTRGVPTAINCLATLLKEPVVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVIVLTLKNLMSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKRLSSFDMYKQEVLLGHLDWSPMHKDPLFWRENITNFEENDFQILRVLITILDTSSDPRTLAVACYDLSQFIQHHPAGRIIVTDLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQV 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3093g00006 452 Pfam V-ATPase subunit H 5 323 IPR004908 GO:0000221|GO:0046961|GO:1902600
Vium3093g00006 452 Gene3D - 5 331 IPR011989 -
Vium3093g00006 452 Pfam V-ATPase subunit H 330 441 IPR011987 GO:0000221|GO:1902600
Vium3093g00006 452 SUPERFAMILY ARM repeat 9 442 IPR016024 -
Vium3093g00006 452 PIRSF V-ATP_synth_H 1 451 IPR004908 GO:0000221|GO:0046961|GO:1902600
Vium3093g00006 452 Gene3D - 343 444 IPR038497 -
Vium3093g00006 452 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 451 IPR004908 GO:0000221|GO:0046961|GO:1902600
Vium3093g00006 452 CDD VATPase_H 2 446 - -
Vium3093g00006 452 SMART arm_5 241 282 IPR000225 GO:0005515
Vium3093g00006 452 SMART arm_5 195 240 IPR000225 GO:0005515
Vium3093g00006 452 SMART arm_5 402 442 IPR000225 GO:0005515
Vium3093g00006 452 FunFam V-type proton ATPase subunit H 343 444 - -
Vium3093g00006 452 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 398 405 IPR018506 GO:0020037
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3093g00006 1 451 Primary Pumps ATPases(2) AT3G42050 79.157 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3093g00006 K02144 - gmx:100788723 858.981