Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3093g00005 ATGGGTTGGTTTACTAAACTGCTCAAGGGATCCAACCGTAAATATTCAGGAGGAGGATATCATGGGAAATATGAAGAGGACAGATATTCAGACAATCATGATAATTCAGCGGATGATTTGACGGAAATTGAGAAAGAAGAAATTGATCGGGCAATAGCACTCTCTCTTTCAGAGGCAGATCCGAAAGGGAAAGGAGTTATTGAGGACGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTGACGATGAGAAAGACAATCGTGTTGGGGAAGTTCAGCAAGACGAAGATGACCATCATGCTCAAATTCAACAGGATGAAGACAAAAATCTTGATGAATTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATCAGTTCTCCTCCTCGATCTGACACTGATTCTTTATTTCAACCTCTTGCAAACTTATTCCCACCTGTTTACAGAACTTGTGCTGGTTGCAATGCCGAGATTGGCAGTGGAAGATTTTTGAGTTGCATGGGAGGTTTTTGGCATCCCGAATGTTTTTGTTGTCATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCAATGTCTGGAAATGGCCGTTATCATAAGTCCTGCTATAAGGAGTTGCATCATCCGAAATGTGATGTTTGCAAAAACTTTATCCCACCAAACTCAGGTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGCCCATCGCATGAGCGTGATGGAACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAGTGGATGCCAAATATCTGTTGCTTGATGATGGCCGAAAGCTGTGTCTGGAGTGTCTTGACTCAGCTATCATGGATACCCATGAATGCCAACCTCTCTATGTTGAGATACAAGAATTTTATGAAGGCTTACATATGAAGATAGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAACGAAGCCATGGAGGGAGAGAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCTGAAGAGCAAACTGTTCCCACTATTTTAAGGAGACCAAGGATAGGGGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGACTGATCCGTCGATGCGATGTGACAGCCATACTTGTTTTGTATGGCCTTCCCAGGCTATTGACTGGATCAATCCTGGCTCACGAAATGATGCATGCGTGGCTTAGACTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGATCTATTCCAGCTCTGGGAATGAAGGTGCATTACCATCATCGTCGTCTTCTGCTTCTTCCTCATCCTCCTCCTCACCTTCATCCTCTGCATCGTCTAAGAAGGGCAAACGTTCTGACTTTGAGAAGAAACTTGGTGAATACTTCAAACACCAGATTGAGTCAGATAGTTCATCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCAGTGCTCAAGTATGGCCTTAAAAGGACCCTTGACCATATCCGAATGACTGGTAGTTTTCCATATTGA 1596 0.4311 MGWFTKLLKGSNRKYSGGGYHGKYEEDRYSDNHDNSADDLTEIEKEEIDRAIALSLSEADPKGKGVIEDDSESEDDELCPLDDEKDNRVGEVQQDEDDHHAQIQQDEDKNLDEFQLEEDEQLARAIQESLSISSPPRSDTDSLFQPLANLFPPVYRTCAGCNAEIGSGRFLSCMGGFWHPECFCCHACKLPITDYEFSMSGNGRYHKSCYKELHHPKCDVCKNFIPPNSGGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESVDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVPTILRRPRIGAGYQLIDMITEPFRLIRRCDVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSSSGNEGALPSSSSSASSSSSSSPSSSASSKKGKRSDFEKKLGEYFKHQIESDSSSAYGDGFREGNQAVLKYGLKRTLDHIRMTGSFPY 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3093g00005 531 CDD LIM_DA1 158 210 - -
Vium3093g00005 531 SMART lim_4 157 209 IPR001781 -
Vium3093g00005 531 FunFam Protein DA1-related 1 152 211 - -
Vium3093g00005 531 Pfam Protein DA1 307 526 IPR022087 -
Vium3093g00005 531 Pfam LIM domain 158 212 IPR001781 -
Vium3093g00005 531 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 245 - -
Vium3093g00005 531 PANTHER PROTEIN DA1-RELATED 2 3 531 IPR045218 -
Vium3093g00005 531 SMART uim 117 136 IPR003903 -
Vium3093g00005 531 SMART uim 43 62 IPR003903 -
Vium3093g00005 531 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Vium3093g00005 531 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 154 183 - -
Vium3093g00005 531 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Vium3093g00005 531 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Vium3093g00005 531 MobiDBLite consensus disorder prediction 53 85 - -
Vium3093g00005 531 MobiDBLite consensus disorder prediction 19 38 - -
Vium3093g00005 531 MobiDBLite consensus disorder prediction 1 38 - -
Vium3093g00005 531 Gene3D Cysteine Rich Protein 155 217 - -
Vium3093g00005 531 MobiDBLite consensus disorder prediction 448 473 - -
Vium3093g00005 531 MobiDBLite consensus disorder prediction 448 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3093g00005 Vium-Chr3093 126676 131173 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium3093g00005 DA1-like 4.7e-104 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3093g00005 - - gmx:100806605 953.74