Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3093g00002 ATGGGAATAGCAACACCCTCTTCTTCCCTTCCTTCTATTATTTCTCACTCCAAGACATACCAGCAACACCATTCCAATTCTATGTCCCAAGATTACCACCACCAAGGAATCTTCAGCTTCCCGAATGGGTTCCAGAGATCGGCTACAACCATGAGTCACCAAGACCCTCACCAACAACAGCAGCACCAGCAGATTCGTAGGGACAAAGTAAGGGTGCAGGGCTTCGAGCCACAGCAAACTTTGGTTCCCATAGAAGAAGACGAACCGGGAAGCCTCCCGGTATACGAAACTGCAGGGATGTTATCAGAGATGTTCACTTTTCCTCCCGGTGCCACAGAATTATTAGCACAACAACAGCATCAGGCGCAACAACAGCTATCAATGACGACGACTTTTAGTTCGTCGGCAAAAGCAGTAAGCAGTAGTGGCAGCGAGTGGTACGGAAACAGACAAGGGATGCTAACCGGGTTGGGACCGTTGGGAGATTCCAAGAATCATCATCATAGCAGTGTGAATAGCCGTGACAGTAGCAGCAGCAACATAGTTCAGCATCAGCATCATCATCATCACCACAACCACCATCATCACCATCAGATGTCAAGCATTAATGCAGACTCAGCAGCTGCCATGCAGCTTTTTCTCATGAACCCGCAAACCACCAGATCCCCTTCTCCCCCTCCGCCTCCTTCTTCCACTCTCCACATGTTACTTCCCACGTTTCCTCCGGGCTCAGGAGGGTCTTTTGGTCAATTCACGTGGCTCCCTGACACTGCTCAAGATGGAGGAGGACCCAGTACGGTTGTGGAAGGCCCCGGTCACGGTCAAGGACTTTCCTTATCCTTGTCGTCCTCCTTAGAAGCTGCGAAAGCGGAGGAACTTAGGATGGGAGATAGTGGGTTTTTGTATTACAATCAAGCTAGTGGAGGACCCTCTTCCTATAAGAGTGCTCTCGGGGGTCATCACCACCAAGCATTGTTGGGACAAACCCATCAGGGGCATGTTGGCTTTGCGGCATCATCGTCCACATCATCCTTAGGTGTTGTCAACGCCTTGAGGAATTCAAAGTATATCAAGGCTGCTCAGGAATTGCTTGAAGAGTTTTGCAGTGTTGGGAGGGGCCAGTTCAAGAAGAACAAGTTCAATAGGCAACTCTCAAACCCTAGCTCCAATCTTGGAGGTAGTGGCGGCGGCGGCGGTGCTTCCTCGTCTTTATCAAAGGATGTTCCTCCTTTGTCAGCAGCTGATAGGATTGAGCATCAAAGGAGGAAGGTCAAACTTCTAACAATGCTTGACGAGGTAGATCGGAGATACAGCCACTACTGCGAGCAAATGCACATGGTGGTGAACTCGTTTGACATGGTCATGGGTTTTGGTGCTGCTGTGCCATACACAGCACTTGCGCAGAAAGCAATGTCTCGTCACTTTAGGTGTCTAAAGGATGCCATAACAGCGCAACTGAAGCATAGTTGTGAGCTGTTGGGAGAGAAAGATGGGGCAGGGAACTCAGGGTTGACCAAAGGAGAGACCCCAAGGCTCAAGATGCTTGAACAAAGTTTGAGACAGCAAAGAGCGTTTCACCAAATGGGGATGATGGAACAGGAAGCTTGGAGACCCCAGAGAGGGTTGCCAGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTTCATCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAATGCAAGGGTTCGGTTGTGGAAACCCATGGTGGAAGACATGTACCAACAAGAACTCAAGGAAGCTGAAGGGGCAGAAGAGGAGAGAGAGAGAAACCAAAGCAGCAGCAATAACAGTGGCCACCAACTGGCACAAACCCCAACGCCCTCCACCACGGCATCGACAGCAACAGCGCCACCACCGCCTCCAACAACATCGACAGCGACGACACCACCAACAGCCAAAAGATCCGACACCGAAAGCGACCCTTCACTCGCTCCAATAAATAACAACAGGCCACAGGGAGCCTTCTCGGAAACACAACCCAACACCTCAACCACCGCCACTGCCTCTGAGGTGGCGCCGTCCTCCGAGCTTCCCCGGTCGATGGGGGCTGATGACTCATGCCGGCACGGTAGCCTCGTTGCGGCGGAGTTTGGGACTGGTCCTGGCGCTTCTGACATTGGTTCGACACTGATTAGGTTTGGGACCACCGCAGGTGACGTGTCACTGACACTAGGGCTACGCCACTCCGGGAACATGCCGGAGAAAACTCCGTTCTCCGTTAGGGACTTTGGAGGCATTTAA 2328 0.5137 MGIATPSSSLPSIISHSKTYQQHHSNSMSQDYHHQGIFSFPNGFQRSATTMSHQDPHQQQQHQQIRRDKVRVQGFEPQQTLVPIEEDEPGSLPVYETAGMLSEMFTFPPGATELLAQQQHQAQQQLSMTTTFSSSAKAVSSSGSEWYGNRQGMLTGLGPLGDSKNHHHSSVNSRDSSSSNIVQHQHHHHHHNHHHHHQMSSINADSAAAMQLFLMNPQTTRSPSPPPPPSSTLHMLLPTFPPGSGGSFGQFTWLPDTAQDGGGPSTVVEGPGHGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNQASGGPSSYKSALGGHHHQALLGQTHQGHVGFAASSSTSSLGVVNALRNSKYIKAAQELLEEFCSVGRGQFKKNKFNRQLSNPSSNLGGSGGGGGASSSLSKDVPPLSAADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMHMVVNSFDMVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGAGNSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGAEEERERNQSSSNNSGHQLAQTPTPSTTASTATAPPPPPTTSTATTPPTAKRSDTESDPSLAPINNNRPQGAFSETQPNTSTTATASEVAPSSELPRSMGADDSCRHGSLVAAEFGTGPGASDIGSTLIRFGTTAGDVSLTLGLRHSGNMPEKTPFSVRDFGGI 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3093g00002 775 MobiDBLite consensus disorder prediction 140 202 - -
Vium3093g00002 775 MobiDBLite consensus disorder prediction 607 714 - -
Vium3093g00002 775 MobiDBLite consensus disorder prediction 1 59 - -
Vium3093g00002 775 MobiDBLite consensus disorder prediction 1 66 - -
Vium3093g00002 775 MobiDBLite consensus disorder prediction 622 640 - -
Vium3093g00002 775 MobiDBLite consensus disorder prediction 381 408 - -
Vium3093g00002 775 MobiDBLite consensus disorder prediction 607 621 - -
Vium3093g00002 775 MobiDBLite consensus disorder prediction 381 415 - -
Vium3093g00002 775 Gene3D - 539 601 - -
Vium3093g00002 775 ProSiteProfiles 'Homeobox' domain profile. 533 596 IPR001356 GO:0003677
Vium3093g00002 775 SMART prehox3 345 484 IPR006563 -
Vium3093g00002 775 MobiDBLite consensus disorder prediction 656 703 - -
Vium3093g00002 775 SUPERFAMILY Homeodomain-like 538 603 IPR009057 -
Vium3093g00002 775 Coils Coil 599 622 - -
Vium3093g00002 775 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 190 623 - -
Vium3093g00002 775 CDD homeodomain 536 597 IPR001356 GO:0003677
Vium3093g00002 775 SMART HOX_1 536 600 IPR001356 GO:0003677
Vium3093g00002 775 FunFam BEL1-like homeodomain protein 4 539 601 - -
Vium3093g00002 775 MobiDBLite consensus disorder prediction 183 197 - -
Vium3093g00002 775 Pfam Homeobox KN domain 553 592 IPR008422 GO:0003677|GO:0006355
Vium3093g00002 775 Pfam Associated with HOX 351 483 IPR006563 -
Vium3093g00002 775 MobiDBLite consensus disorder prediction 641 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3093g00002 Vium-Chr3093 39270 47195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3093g00002 345 775 Homeobox Transcription Factor Family AT2G23760 55.441 1.72e-148 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium3093g00002 POX 3.6e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3093g00002 - - gmx:100814959 1137.09