Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3091g00002 ATGGTTCATTCTGAGATATGGTACCTCCAGCATCATTGGTGGGAGAAAGTTCGTGAGGCTTATGGTAGTAGATATTTGGATAACCTACTATATTCCGGGACAAAAATTGACATAGAAGTCCACTTGGAGAATTGCACTAAGGCTCTTCATGAGGCTATTGCCATCCCAAGAGGTGCAGTCTCTATATCAAGTTTTCAAAAGCTGAAGGCTTACAATCGGATAGAGAGCCTTGTAGAATTTTGGAGGATCGCACTCTGTGAGGCTGCTGAAATTTCGAGGTTGGTAGTCCAGCACTACAGAGGAATAACGGATAATGAGATCAACTACATCGAGAAGCATGCTAGGGACGCACTTCATGAAGCTGCTGGCATCTCCGGGGTTGTAATCCTTAATTCTAGGAATGAAAGTGAAGCTGTGAAAAATATTGTTAAAAATGTTACAAGTTTGTTGGACAAGATAGAGTTGTTTGTTGCCCATAATCCTGTCGGAGTAGAATCTCGAGTGCAAGAAATGGTTCAATTGCTACAACAAAAACAATCAAACGATGTTCTACTACTTGGGGTATGGGGGATGGGAGGCATCGGTAAAACAACTATTGCAAAAGCAATTTACAATAAGATTGGGCAAAATTTTGAGGGAAGGAGTTTCCTTGCAGATATTAGGGACGTTTGGGGGCAAGAAGCTGGCCACGTTTGCTTACAACAACAACTTCTATTTGATATCCACAAAGAAAACAATATAAAGATACATAACATTGAATCAGGAAAAGTTATACTAAGAGAAAGACTTCGCCATAAAAGGATACTTCTTATACTTGATGATGTAAATAAATTACAGCAATTAAATGCTTTGTGTGGAAATCGTGAATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACCAGAGACATACATTTACTTAGAGGGAAAAGAGTTGATCAAGTTTTCGCAATGACAGGAATGAATGTAGATGAATCTATTGAGCTTTTTAGTTGGCATGCATTTAAACAAGCAAGTCCCAAAGAAGATTTTATTGAACTTTCAAGAAACGTAGTTGCTTATGCTGGGGGCTTGCCACTTGCTCTTGAAGTCCTTGGGTCTTATTTGTTTGATATGGAGGTAACAGAATGGAAGACTGTATTGGAAAAACTTAGGAAAATTCCTAATGATGAAGTACAGGAGAAGTTAAAAATAAGCTATGATGGTTTAAGTGATGATACTGAGAAAGGAATATTCCTTGACATAGCATGTTTCTTTATAGGAAAGGATCGAAATGATGTTATACATATATTGAATGGTTGTGGACTTTTCGCAGAAAATGGAATACGTGTCTTGGTAGAGCGAAGTCTTGTAACTGTGGATGATAAGAACCAACTTGGAATGCATGATTTGCTACGGGACATGGGAAGGGAAATAATTCGTTCAAAATCACCAATGGAGCTTGAGGAGCGTAGCAGGTTATGGTTTCATGAGGATGTGCTTGATGTGTTATCAAAAGAAACTGGAACAAAATTTATTGAGGGATTGACTTTGAAGTTACCTAGAAGTAATACAAAATCTCTGTGCACTAAAGCATTTATGAACATGAAGAAACTCAGGTTGCTGCAACTTTCTGGTGTAGAACTTGTTGGAGATTTTGAATATCTTTCCAAAGACCTGAGATGGCTTTGTTGGCATGGATTTCCTTTTGCCTTCATACCAACAAGCTTTTATCAAGGAAGTCTAGTTTCTATTGAGTTAGAAAATAGTAAGATTACCATGGTGTGGAAAGCGACTCAGCTGATGGAGAAGTTGAAAATTCTTAATCTTAGCCATTCTCATTATTTAACAAAGACACCAGACTTTTTGAATTTGCCTAATCTTGAAAAGCTTATACTCATGGATTGTCCAAGGCTGTCTGAAGTTTCATATACCATTGGTCATCTCACCAAAGTTCTACTAATAAACTTTCAAGATTGTATTAGCCTTCGTAACCTTCCAAGAAGTATCTATAAGTTGAAATCTCTTAAAACACTCATTCTTTCGGGTTGTCTAAAGATTGATAAGTTGGAAGAGGACATAGAACAGATGGAGTCTTTGACAACCCTTGTTGCTGACAAGACTGCTATAAGAAGGGTGCCCTTTTCAATAGTCAGATCTAAAAGTATTGGATATATTTCATTATGTGGTTATGAAGGATTTTCCTGCGATGTGTTTCCCTCTATCATTTGGTCTTGGATGTCACCAGTAAATAGTCTGTCTTCTCGTGTTCAAACATTGGTGGACATGTCTTCTCTTGTTTCTTTAGATGTACAAAATAGCAGTTCCAATCAGCTATCATATATATCTGAGGAGCTTCCAAAGTTTCAAAGTCTTTGGATAGAGTGTGGTTCTGATCTTCAACTTTCTCGAGATACAACGAGTATTTTGGATGCTTTAAATGCGACAAATTCTGAAGAATCGGAGTCATATGGAACAACATCACAAATGCAGAATGTATTTACATTAATTGAAAGCAATTCAAGATCTAAATTGTTTGAGAAGACACTTTTAATTCAAATGGGAAGCAGTTGGGAAATCACACATATTCTGAAACAGAGAATTTTGCAGAATATGACTACGAGTAATGGCGGTGATTGTTTGCTACCTGGTGATTGTTTGCTACCTGGCGATTGTTATCCAGATTGGTTAACTTTCAGCAGCGAAGGTTCTTCTGTGACTTTTGAAATTCCTGAAGTGAATGGGCGTAGCTTGAAGACAATGATGTGCCATATCCATTATTCTTCCTCAGACAGTATAACATCAGACGGCCTGAAAAATTTGTTGGTGATAAATCACACAAAGAGCACCATTCAGCTTTATAAGAGAAATGCATTAGCGTCGTTTGATGATGAGGAGTGGCAGAGGGTACTATCAAACATTGAGCCTGGAAACAAGGTGCAAATTGTTGTTGTTTTCTGGAACAGAATAACTGTTAACAAGACATCAATTTATCTTATATATGAGGCAATTGATGAAAAAGTAGAGCACTATCATGCATCAAATATGAATGTTCCTAGGTCGATCTCTCCCGGAGTGGAATCCATGGAGGACTTGAGGGGTGCTTCCGTTAAAAGCTTAACTAAACGCTTATTGAACGAATTCTTATCATGTAAATACTTTTGTAAAGGGAAAGTTGATAAGAAGAAAAATCAAGGTTAA 3180 0.3752 MVHSEIWYLQHHWWEKVREAYGSRYLDNLLYSGTKIDIEVHLENCTKALHEAIAIPRGAVSISSFQKLKAYNRIESLVEFWRIALCEAAEISRLVVQHYRGITDNEINYIEKHARDALHEAAGISGVVILNSRNESEAVKNIVKNVTSLLDKIELFVAHNPVGVESRVQEMVQLLQQKQSNDVLLLGVWGMGGIGKTTIAKAIYNKIGQNFEGRSFLADIRDVWGQEAGHVCLQQQLLFDIHKENNIKIHNIESGKVILRERLRHKRILLILDDVNKLQQLNALCGNREWFGSGSRIIITTRDIHLLRGKRVDQVFAMTGMNVDESIELFSWHAFKQASPKEDFIELSRNVVAYAGGLPLALEVLGSYLFDMEVTEWKTVLEKLRKIPNDEVQEKLKISYDGLSDDTEKGIFLDIACFFIGKDRNDVIHILNGCGLFAENGIRVLVERSLVTVDDKNQLGMHDLLRDMGREIIRSKSPMELEERSRLWFHEDVLDVLSKETGTKFIEGLTLKLPRSNTKSLCTKAFMNMKKLRLLQLSGVELVGDFEYLSKDLRWLCWHGFPFAFIPTSFYQGSLVSIELENSKITMVWKATQLMEKLKILNLSHSHYLTKTPDFLNLPNLEKLILMDCPRLSEVSYTIGHLTKVLLINFQDCISLRNLPRSIYKLKSLKTLILSGCLKIDKLEEDIEQMESLTTLVADKTAIRRVPFSIVRSKSIGYISLCGYEGFSCDVFPSIIWSWMSPVNSLSSRVQTLVDMSSLVSLDVQNSSSNQLSYISEELPKFQSLWIECGSDLQLSRDTTSILDALNATNSEESESYGTTSQMQNVFTLIESNSRSKLFEKTLLIQMGSSWEITHILKQRILQNMTTSNGGDCLLPGDCLLPGDCYPDWLTFSSEGSSVTFEIPEVNGRSLKTMMCHIHYSSSDSITSDGLKNLLVINHTKSTIQLYKRNALASFDDEEWQRVLSNIEPGNKVQIVVVFWNRITVNKTSIYLIYEAIDEKVEHYHASNMNVPRSISPGVESMEDLRGASVKSLTKRLLNEFLSCKYFCKGKVDKKKNQG 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3091g00002 1059 Gene3D - 103 155 IPR035897 -
Vium3091g00002 1059 SMART AAA_5 182 322 IPR003593 GO:0016887
Vium3091g00002 1059 SUPERFAMILY "Winged helix" DNA-binding domain 390 497 IPR036390 -
Vium3091g00002 1059 PRINTS Disease resistance protein signature 185 200 - -
Vium3091g00002 1059 PRINTS Disease resistance protein signature 355 369 - -
Vium3091g00002 1059 PRINTS Disease resistance protein signature 262 276 - -
Vium3091g00002 1059 PRINTS Disease resistance protein signature 664 680 - -
Vium3091g00002 1059 Gene3D - 156 314 IPR027417 -
Vium3091g00002 1059 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 104 788 IPR044974 GO:0006952
Vium3091g00002 1059 Gene3D Ribonuclease Inhibitor 503 808 IPR032675 -
Vium3091g00002 1059 Gene3D - 321 404 IPR042197 -
Vium3091g00002 1059 Pfam NB-ARC domain 165 392 IPR002182 GO:0043531
Vium3091g00002 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 415 IPR027417 -
Vium3091g00002 1059 SUPERFAMILY L domain-like 509 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3091g00002 Vium-Chr3091 7323 14489 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3091g00002 162 660 WRKY Transcription Factor Family AT5G45050 35.094 3.80e-77 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3091g00002 - - var:108322530 1944.47