Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3086g00003 ATGGAAGAAACATCAACATCTATCATCATGGCGGCACTCTCCACCCTCACCCCTTCCCAATTCTCAGATCTCACCCACTCCATTCTATCCACTACGCTCCACCACCATCGCCGTCTCGCCTTCCTCCTTTCTTCCCCAACGCTCTTCTCTCTAACCCTCCACCACCTCCACAACCTCTCTCTCTCCCAGAAGACGCTTCTCATCGCCCGCCACCTCCTCTCCTTTCTCCACCTCCTCACTGCCACCTCCCCGTCGCTGTCCACAGCCACGAGGCAGCGCGACCTCGACGCTGCGCTTCTCATCCTCCTCCTTTGCGAAACGCACAACCACAATCCACATGCCCTCGAGGCACCCCTTTTCCCAATGGAGGTCCACCTCAGCACCATCTTCTCCGATTCATTGTTGACTCTTTCCTTTGCACCCTTTGGGTCATGCACGGGCTCGACGGCTGCGATTCCCTTCGTGGAGACCGTGACGCGCTGCTGGAGACTCGTCGGTGCACTGGAATGCGGCGGAGGAAAGGAATCGGGGGAGGTGGCTGCGTCGGCTACGGCGGTGGTGGCGCTGCCATCGGTGGAGGTGAGGGCCGGTGGGATAGAGTGTGCGATATGCAGAGAGGAGATGACAATAGGGAGGGACGTGTGCGAGTTGCCATGTCAGCACTTGTTTCATTGGGTGTGTATCTTACCGTGGCTTGGGAAGAGGAACACGTGTCCTTGCTGCAGGTTTCGGTTACCGTCCGATGATGTCGTAGGAGAGATCCAACGGCTGTGGGAAATCTTGGTTAAAACGGCTGCAAAAGATTCGTAG 810 0.5728 MEETSTSIIMAALSTLTPSQFSDLTHSILSTTLHHHRRLAFLLSSPTLFSLTLHHLHNLSLSQKTLLIARHLLSFLHLLTATSPSLSTATRQRDLDAALLILLLCETHNHNPHALEAPLFPMEVHLSTIFSDSLLTLSFAPFGSCTGSTAAXIPFVETVTRCWRLVGALECGGGKESGEVAASATAVVALPSVEVRAGGIECAICREEMTIGRDVCELPCQHLFHWVCILPWLGKRNTCPCCRFRLPSDDVVGEIQRLWEILVKTAAKDS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3086g00003 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 139 247 - -
Vium3086g00003 270 SMART ring_2 202 242 IPR001841 -
Vium3086g00003 270 Pfam Ring finger domain 201 243 IPR001841 -
Vium3086g00003 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 254 IPR013083 -
Vium3086g00003 270 SUPERFAMILY RING/U-box 198 248 - -
Vium3086g00003 270 CDD RING-H2_PA-TM-RING 201 243 - -
Vium3086g00003 270 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3086g00003 Vium-Chr3086 10198 11726 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3086g00003 1 266 C3H Transcription Factor Family AT5G02750 49.470 2.67e-76 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3086g00003 K11982 - gmx:100810879 379.022