Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3084g00002 ATGTATTGGGGGAAAGTTTTGGGTGGCCAGATAGGTGGTGGAGGTGTGATGGAGGAGGAGGTATGGAGGAAGGGACCATGGACTGCTGAAGAAGACAGGTTGCTTGTTGAGTATGTCAGACTGCATGGTGAAGGAAGATGGAACTCTGTTTCTAGGCTTGCAGGGTTGAAAAGAAATGGAAAGAGCTGCAGATTGAGGTGGGTGAATTATCTGAGGCCTGATCTCAAGAGGGGACAGATAACACCACAAGAAGAGAGTATAATTCTGGAGTTGCATGCAAGGTGGGGAAACAGGTGGTCAACAATTGCAAGGAGTTTTCCAGGGAGAACTGACAATGAGATAAAGAACTATTGGAGGACTCATTTCAAGAAAAAGGCTAAAAGTCCCTCTGATGCAGCTGAAAAGGCAAGGAATAGAGTCCTGAGGAAGCAGCAATTTCAGCAGCAACAGTTGCTGCAGCAGCAGCAGCAACAGTATCAGGCACAACAACAGCTACAGTTCAACTTTGACATGAAAGGCATCATGGCCTTGCTTGAGGATAACAACACATGTAGAGCACCTTATGCAGCACCTCAAACTAGACAAGAAATGATCAACATGCAGCAAAACACCACAGAAGAGCAATTCTTGTACTCCATGCTCAATAGCAACTTTTCTGCACCAGAAACCTCATCTGAAGAAACTTTTTTGGATGGTCTGTGGAACTTGGATCATGGGAATTTCACTGTAACTAGTGCAGCAAGCAAAGTTGGTCTATACAATTTAGTTGCTCCCTTCTGTTAA 783 0.447 MYWGKVLGGQIGGGGVMEEEVWRKGPWTAEEDRLLVEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSFPGRTDNEIKNYWRTHFKKKAKSPSDAAEKARNRVLRKQQFQQQQLLQQQQQQYQAQQQLQFNFDMKGIMALLEDNNTCRAPYAAPQTRQEMINMQQNTTEEQFLYSMLNSNFSAPETSSEETFLDGLWNLDHGNFTVTSAASKVGLYNLVAPFC 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3084g00002 260 Gene3D - 81 125 - -
Vium3084g00002 260 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Vium3084g00002 260 Pfam Myb-like DNA-binding domain 77 121 IPR001005 -
Vium3084g00002 260 Gene3D - 24 76 - -
Vium3084g00002 260 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 235 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vium3084g00002 260 FunFam MYB-related transcription factor 81 125 - -
Vium3084g00002 260 CDD SANT 81 122 IPR001005 -
Vium3084g00002 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Vium3084g00002 260 ProSiteProfiles Myb-like domain profile. 23 71 IPR001005 -
Vium3084g00002 260 CDD SANT 26 71 IPR001005 -
Vium3084g00002 260 FunFam Myb transcription factor 24 76 - -
Vium3084g00002 260 SUPERFAMILY Homeodomain-like 23 118 IPR009057 -
Vium3084g00002 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 75 IPR017930 -
Vium3084g00002 260 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Vium3084g00002 260 SMART sant 23 73 IPR001005 -
Vium3084g00002 260 SMART sant 76 124 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3084g00002 Vium-Chr3084 543 1939 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3084g00002 17 260 MYB Transcription Factor Family AT4G13480 54.545 9.88e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3084g00002 Myb_DNA-binding 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3084g00002 K09422 - gmx:100795981 395.586