Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium307g00023 ATGGAAAACTCTTCATCATCTTCATCTTCAAACTCTATATATCGAGAGTGTCTCCGCAACCATGCAGCGAGTCTCGGTAGCTACGCTACCGATGGTTGCGGAGAATTCACTCTCGATATCGACGTCTCCTCTTCCTCCCTCCAGTGTGCAGCATGCGGTTGTCACCGCAACTTCCATCGCAAAGTGACGTGTCCCGGTGCGATGGAAGGTCTGCAGGTTGGAGGGAGCGGGGATATAATGGAATATTCTGGAGGAGACGTCGGAAGAATGGAGATGGGAGAGAGGAGCAGCAGGAAGAGGTTCAGGACTAAGTTCAGTGCTGAGCAGAAGGAGAAGATGTTGGCGTTTGCAGAGAAGCTGGGGTGGAAGCTGCAGAGGAGAGAGGTGGATGATGAGATAGAGAGGTTTTGTAAAAGTGTTGGAGTTACAAGACAGGTTTTCAAGGTGTGGATGCATAACCATAAGAACAACTCTAACTCATCTAATTCTTCTGCTAATCTTTCTTCCCTCACTCAGTGA 519 0.4875 MENSSSSSSSNSIYRECLRNHAASLGSYATDGCGEFTLDIDVSSSSLQCAACGCHRNFHRKVTCPGAMEGLQVGGSGDIMEYSGGDVGRMEMGERSSRKRFRTKFSAEQKEKMLAFAEKLGWKLQRREVDDEIERFCKSVGVTRQVFKVWMHNHKNNSNSSNSSANLSSLTQ 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium307g00023 172 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 14 62 IPR006456 -
Vium307g00023 172 Pfam ZF-HD protein dimerisation region 13 63 IPR006456 -
Vium307g00023 172 FunFam Zinc-finger homeodomain protein 2 86 160 - -
Vium307g00023 172 NCBIfam homeobox domain, ZF-HD class 98 156 IPR006455 -
Vium307g00023 172 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 157 - -
Vium307g00023 172 Gene3D - 83 162 - -
Vium307g00023 172 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 14 61 IPR006456 -
Vium307g00023 172 SUPERFAMILY Homeodomain-like 90 157 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium307g00023 Vium-Chr307 140081 140973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium307g00023 14 156 ZF-HD Transcription Factor Family AT4G24660 44.311 1.61e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium307g00023 ZF-HD_dimer 4.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium307g00023 - - vun:114182488 306.219