Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium307g00011 ATGCCCCAGAATAGCATTTTCCGAGACCAATCATCGAATCAGATTCCTGATCTTTCCCTTCACATTAGCCTCCCAAACAGTGCTCCTTCTTCAATTTACACTGGAGGGGATTCGCCCTTTGATACATGGCCACAACAAGCAGATGAAGATGACTATGCCGAAGGCTTCAAATCCCACAGTGATGGTTCAATCAAAGGTTGTAGCCCTTACCACACAGATACACAACTTTCTTTAGCAAACTCTACAACTGCTTTCACTGCTACTCCCTCTGAGGCTGACAGCACCTGGAGGAAGAGAAACTTTGTTAGACTCAGCCATCATCATGGGGTTTCTGATGGTCAAATAAGACTCATCAATGGAATCCCTCTCTACAGTAACCTTTCATCTTTGGACAACACCAGTACTGCTCCCTCAATAGAGAGAAGCCCCACCAACAAGTTTTCCTTTCCTTCTCTATATTCACTTCCACACCCTCCTTATTCTGCCAATTCTGCTCCTAACTATAGCTATAATGGTGCTGTTGGGGGTGTGGCAGCAGAACCAATCTCAAGGTTTCATGATATAACCATGGAGAATACTCCAAGGCCCCAACAGTTTCAGTACTTTGATTACCCTCAGCAGCTGCAGCAGTTTGGGAATAGTACAAATTTTGGAGCTTCTGAATTTTCTAATGGATTTGTGAGGTCAAGAATGTTGCCAAGGCAACAAAGTAGTAAGAGGAACATGAGGGCTCCGAGAATGCGTTGGACTAGTTCTCTTCACAACCGCTTTGTTCATGCTGTTGAACTACTTGGTGGCCATGAAAGGGCTACTCCTAAGTCAGTTTTGGAACTAATGGATGTGAAAGATCTAACACTAGCTCATGTGAAGAGTCATTTGCAGATGTATCGGACTGTTAAGAACACTGACAAACCTGCACCTTCTTCAGATGGGGATGAGGATTTCATGTCCATAACAGTCCCAAATAATCAAAATAAGAATTTTTTACCCAATCAGAGAGGAGCTCCAAATGCATCCATGGATCATGATATGGGCCACACTTCCAGAAATCTATGGGCTAATTCTTCTACCAGTAGAGGAGCACGGATAGAAGCTAGTACACATGATTTGGAAGAAATCATAGCATCTCAGCATTCTGGGAAATTTTCTGAGGGAAACAACAACTACACACAAACAAGAAGCTTCAAGGATCAAAATCCAAGCTTGGAGTTCACCTTAGGGAGATCAACACAAGAATGA 1239 0.4318 MPQNSIFRDQSSNQIPDLSLHISLPNSAPSSIYTGGDSPFDTWPQQADEDDYAEGFKSHSDGSIKGCSPYHTDTQLSLANSTTAFTATPSEADSTWRKRNFVRLSHHHGVSDGQIRLINGIPLYSNLSSLDNTSTAPSIERSPTNKFSFPSLYSLPHPPYSANSAPNYSYNGAVGGVAAEPISRFHDITMENTPRPQQFQYFDYPQQLQQFGNSTNFGASEFSNGFVRSRMLPRQQSSKRNMRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAPSSDGDEDFMSITVPNNQNKNFLPNQRGAPNASMDHDMGHTSRNLWANSSTSRGARIEASTHDLEEIIASQHSGKFSEGNNNYTQTRSFKDQNPSLEFTLGRSTQE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium307g00011 412 SUPERFAMILY Homeodomain-like 242 299 IPR009057 -
Vium307g00011 412 Gene3D - 244 301 - -
Vium307g00011 412 Pfam Myb-like DNA-binding domain 246 297 IPR001005 -
Vium307g00011 412 FunFam Myb family transcription factor 243 301 - -
Vium307g00011 412 NCBIfam myb-like DNA-binding domain, SHAQKYF class 245 298 IPR006447 GO:0003677
Vium307g00011 412 MobiDBLite consensus disorder prediction 379 412 - -
Vium307g00011 412 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 410 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vium307g00011 412 MobiDBLite consensus disorder prediction 322 412 - -
Vium307g00011 412 MobiDBLite consensus disorder prediction 348 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium307g00011 Vium-Chr307 70113 78946 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium307g00011 225 408 G2-like Transcription Factor Family AT5G16560 50.251 6.45e-47 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium307g00011 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium307g00011 - - gmx:100796973 570.466