Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium307g00009 ATGAAGACTTTCTCCTCAATTCAACTACCCCACCATTTTTATTGTGCAAGATTCTTCTCCTACACAACCACAAGGACTCAACTTTCTTTTCCTGCAAAGGTCTTCATTTGCCAGGCAAAATCAGGTATAGATGGGTCATTGAATTTAAAAGTGGTGTCTCCCACTCTGTTAGTAGCAGAAAAGGAAGAAGCCAAGGCTGTATTGGCCTTGTTCTTGAAGAAGCAAGGTTTGAGCAATGCGGTTGCTGCTAGAACCATCAACAAGTCAGATCTTTTTATTGATCACCTTGTCTCAAAGCTTCATTCTAAACACAGATCTTGGTATCTTGCAGGAAGAGAGCTTACAACTTTGGAGATCAGGGATGCTCTTATCCCTTATCTTGAATCTCTGTTTGAAGAGCATGGTGACATTCTAGTGGATGTCGTGGAAAACTATCCAAACCCACCTGTTAAGGACAAATCTGCAGTGCCAGTTCCTCCTTCTAGTCCAGTCTTAGACTCTAAGAAGCTTAAAGCTGTGTCACTAGTGAGTGAGACAGACCCAGATGGTGGCAATCTGCGCCCTCATATTGTCTATCTCATGGAACTTGGTATGGATATTGAGCAGATTCGGAGTATCACACATCGATTCCCAGCTTTTGCCTACTATAGCTTGGAGGGTAAAGTTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGGGTTCCAAGAGAGCACATTCCCATTATCCTCAGTAAAAGGCCACAGTTATGTGGTTTCAGTCTATCTGAAAATCTTAAACCCACCATGAAGTTCTTAGAGTCATTGGGTATTGACAAGAAGCAATGGCCAAAGCTGATCTATCGCTTCCCAGCCCTGCTAACTTATAGCAGGCAGAAAGTGATGGAAAGCATAGATTTCCTTCTTGAATTGGGCCTATCTGAAGAGAATATAGGTAAGATTTTAACTCGTTGCCCCAATATCGTTAGTTATAGTGTAGAGGACAATCTCCGACCCACAGCAAAGTACTTCCATTCTTTGGGGGCTGATGTTGGCATTCTTCTATTCAGATGCCCACAGAATTTTGGACTTAGCATTGAGGCCAACCTGAAACCTATAACAGCATTTTTCTTGGAGAGGGGATACACTTTGGAAGAAATTGGTACCATGATTTCAAGATATGGAGCCTTGTATACTTTTAGCTTGACTGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCACAGGATACCCAAACTCTGAGCTGGTTAAGTTTCCTCAGTATTTTGGATACAGTTTAGAGAAAAGGATTAAACCTAGATTTGCAATCATGAAGAAATCTGGGGTAAAGTTACTGCTGAACCAGGTTCTTTCTCTGTCAAGCAACAACTTTGACAAGGCCTTGAAAAAGAAAATGAAAAAAATGCAAGATGGTTAG 1416 0.411 MKTFSSIQLPHHFYCARFFSYTTTRTQLSFPAKVFICQAKSGIDGSLNLKVVSPTLLVAEKEEAKAVLALFLKKQGLSNAVAARTINKSDLFIDHLVSKLHSKHRSWYLAGRELTTLEIRDALIPYLESLFEEHGDILVDVVENYPNPPVKDKSAVPVPPSSPVLDSKKLKAVSLVSETDPDGGNLRPHIVYLMELGMDIEQIRSITHRFPAFAYYSLEGKVKPVVEFFLELGVPREHIPIILSKRPQLCGFSLSENLKPTMKFLESLGIDKKQWPKLIYRFPALLTYSRQKVMESIDFLLELGLSEENIGKILTRCPNIVSYSVEDNLRPTAKYFHSLGADVGILLFRCPQNFGLSIEANLKPITAFFLERGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPNSELVKFPQYFGYSLEKRIKPRFAIMKKSGVKLLLNQVLSLSSNNFDKALKKKMKKMQDG 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium307g00009 471 Gene3D Transcription termination factor 3, mitochondrial 247 467 IPR038538 -
Vium307g00009 471 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Vium307g00009 471 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Vium307g00009 471 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Vium307g00009 471 SMART mt_12 167 199 IPR003690 GO:0003690|GO:0006355
Vium307g00009 471 SMART mt_12 344 375 IPR003690 GO:0003690|GO:0006355
Vium307g00009 471 SMART mt_12 380 411 IPR003690 GO:0003690|GO:0006355
Vium307g00009 471 SMART mt_12 276 306 IPR003690 GO:0003690|GO:0006355
Vium307g00009 471 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Vium307g00009 471 FunFam Transcription termination factor MTERF5 chloroplastic 247 467 - -
Vium307g00009 471 PANTHER CGI-12 PROTEIN-RELATED 146 462 IPR003690 GO:0003690|GO:0006355
Vium307g00009 471 Pfam mTERF 184 364 IPR003690 GO:0003690|GO:0006355
Vium307g00009 471 Pfam mTERF 291 457 IPR003690 GO:0003690|GO:0006355
Vium307g00009 471 Pfam mTERF 54 301 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium307g00009 Vium-Chr307 53866 57359 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium307g00009 mTERF 3.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium307g00009 K15031 - gmx:100781900 781.941