Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium307g00002 ATGGTGTTGGGATGGAGGAGGAGGAAGGGAAACAGAAAGCACAGCAAAGGTGGGAAACCCGTGATGGAGTTGGTGGTTCCGAACCACTTCAGGTGTCCAATTTCTCTTGACACGATGAAGGATCCTGTGACACTGTCAACCGGGATAACCTACGACAGGGAGAATGTGGAGAGGTGGTTTGAAGAAGGGAACATCACATGTCCGGTTACCAACCAGGTTGTGAGAAACTTTGACATGATTCCAAACCACTCTCTCAGGATGATGATCCAAGATTGGTGTGTGGAGAATAGGCAACATGGGGTGGAGAGGATTCCGACACCAAGAATTCCAATCAGCCCAATTGAGGTTGCTGAGCTTCTGATGCAAGTGAAGAACTCGGCAAGGGGTTTGGACCAATATGGCTGTCTTGAATTGGTGCAGAAAATGAAGAAATGGGGTGAGGAGAGTGAGAGGAACAAGAGGTGCATAGTGGATAATGGAGCACCTGTGGCATTGGCTTCATCGTTTGATGCATTTGCCAATGACTCGGTGGAGAGAAACGTGGTGGTTCTTGAGGAGATTCTGTCAGCTCTGAATTGGATGTTTCCACTACAACTTGAGGCACAAAAGTCCTTGGGATCTTTGGCTTCTCTAAGGTGCATGGTTTGGTTCTTGAAGCACCAAGATCTCTCAGGGAAAGAGAAGTCCATTGTGGCATTGAGAGAGCTTCTTTCGTTCGGTGATGTACAGCATGTGGAGGCTTTGTCACAGATTGAAGGGGTGAATGAGCTCTTGGTGGAGTTCATCAACAAGAGGGTCAGTCCAACCATCACAAAGGCTTCATTGAGGGTGGTTTGGTACATGGTCTCATCCTCTTCAAATTGCAGTGAGAAAATGAAATTGGCATTTGTTGAACTGGGTTTGGTTTCTTGTTTGCTTGACATTCTGATTGAGTCAGAGAAGAGCAGGTACGAGAAGGCTTTGGCCATTTTGGACTCTCTGTTCAGCTGTGAAGAAGGAAGAAACAAAGGGTGTGGGAATGATCTAACAGTTCCTCTTTTGGTGAAGAAAATTCTGAGAGTTTCACCTTTGACCACAGACTATTCTGTCTCTGCCCTTTGGAAGCTTTGCAAGTTTGGTGAAAAAGACGAAGGAAGAACCCTTCTTGAGGCCCTTCAAGTCGGTGCCTTTCAGAAGCTCTTGCTGGTTTTGCAAGTTGGTTGTGGTGATGAAACCAAGGAGAAAGCAACAGAACTTCTCAAGTTGATGAATCCTTACAGGGCTGAATTGGAATGCATAGACTCAGATTACAAGAATGTTAAGAGATCATTTTAA 1314 0.4574 MVLGWRRRKGNRKHSKGGKPVMELVVPNHFRCPISLDTMKDPVTLSTGITYDRENVERWFEEGNITCPVTNQVVRNFDMIPNHSLRMMIQDWCVENRQHGVERIPTPRIPISPIEVAELLMQVKNSARGLDQYGCLELVQKMKKWGEESERNKRCIVDNGAPVALASSFDAFANDSVERNVVVLEEILSALNWMFPLQLEAQKSLGSLASLRCMVWFLKHQDLSGKEKSIVALRELLSFGDVQHVEALSQIEGVNELLVEFINKRVSPTITKASLRVVWYMVSSSSNCSEKMKLAFVELGLVSCLLDILIESEKSRYEKALAILDSLFSCEEGRNKGCGNDLTVPLLVKKILRVSPLTTDYSVSALWKLCKFGEKDEGRTLLEALQVGAFQKLLLVLQVGCGDETKEKATELLKLMNPYRAELECIDSDYKNVKRSF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium307g00002 437 Pfam U-box domain 26 97 IPR003613 GO:0004842|GO:0016567
Vium307g00002 437 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Vium307g00002 437 Gene3D - 116 416 IPR011989 -
Vium307g00002 437 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Vium307g00002 437 SUPERFAMILY ARM repeat 147 414 IPR016024 -
Vium307g00002 437 CDD RING-Ubox_PUB 27 79 IPR045210 -
Vium307g00002 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 104 IPR013083 -
Vium307g00002 437 FunFam RING-type E3 ubiquitin transferase 26 97 - -
Vium307g00002 437 PANTHER WDSAM1 PROTEIN 22 417 IPR045185 GO:0061630
Vium307g00002 437 SUPERFAMILY RING/U-box 22 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium307g00002 Vium-Chr307 16315 18186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium307g00002 5 437 U-box Gene Family AT5G37490 43.311 1.99e-112 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium307g00002 - - gmx:100794340 778.859