LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3078g00003	ATGCCATCGCGTCCGCCGCCTCCCTCGCCTCACGCGGCGGTTTCCGCCATCTCGCACCGTCGAGAGATGATTCTCTGCGGGGTAATCGGCGGGGCGCTCTTCTTAACGGCGCTTATTGTCTCTGTCACGGTCTTTCTCTACCGGAAACTTTCTTACAACCGAACGGCGCCGTTTGAGCACAACCAGCGACGTTTCTCTTACTCTGTTCTACGCCGCGCGACGAACTCGTTCTCGCCGTCGACGAAGCTCGGGCACGGCGGGTTCGGTTCGGTTCACAAAGCGACTCTGCCTTCCGGCCAGACTGTGGCGTTGAAGGTTATGGACTCGCCCGGGTCAATCCAGGGGGAGAGAGAGTTCCACAACGAGTTGACGCTGTGTTCGAATCTGAGGTCGCCGTTTGTTATTTCGTTGCTCGGTTTTTCTTCGGACCGGCGCGGTCGGAAGCTGGTTCTGGTTTACGAGCTGATGCCGAACCGGAGTTTGCAGGATGCGTTGCTGGACCGGCGGTGTCCGGAGCTGATGTCTTGGGCGAAGAGGTTTGACATCGCCGTTTCGGTGGCGATGGGGTTGGAGTATTTGCACCACTCGTGTGAGCCTCCGGTGATTCATGGGGATATAAAGCCGAGTAATGTGTTGCTGGATGAGGATTTTGGAGCGAAGATTGGGGATTTTGGGCTTGCTAGGGTTAAGGCGGTGGAGGATCTGGGAATGGTGGAGGAGAAGAAGGAAGGGGTTGTTGAAATTGCGGTCGAGGAGTTTGGGGTGACGGAGGAGGGGGAGAGTGTGAGTGTGGTGGATGTTGACCGGTCGCCGGAGAGTTGTCCTGTGAGGGCTGTCGATTACTCGGACGCGTCCCCGGTAGGGGGTGATAAGTTGAGTGTGGTGTCGGATGGGTGCTTTGAGAGTGTTGATAGTGAGAATGTGAATTTGAACAAGAAGAAGGGTGGTGGTGGTTCAGGGAGGGATTGGTGGTGGAGGCAGGAGAGTGGGGCAGGGGGGGAATCGGGGAGAGTGAAGGATTATGTAATGGAGTGGATCGGGAGTGAGATTAAGAAAGAGAGGCCCAAGAGTGAATGGGTTGATTCGTGTTCATCTTCTTCTCCTAAGGTGGAGAACGAGAATGGGAATGTTAATGGGAATGAGAAAAGTAAAAAGGAGAGGAAGAGGCTGGATTGGTGGGCGTCTCTCGATGAGGAGAAGGTTAAGAGTAAGGTGAAGAAGAATCGGAAGCCGAGGGAGTGGTGGAAGGAGGAGTTTTGTGAGGAGTTGTCTAATAAGAGTAAGATGAAGAAGAGAGGTTTGGAGTGGTGGCAGAGGGAGGAGGAAGGGGTGGAGCAGAAGAAGAAGAGGAAGAGTAAGGGGAGTAGAGGGAGTATTGATTGGTGGTTGGATGGGTTGAGTGGGGAGATAAGGAACAATGGGAGGAGGAACAGCCAGGATTGGGGGATTAGTGGGGATGTGCCGAAGAGTGGTGGGATCAGTAGCACTCCTAGTATGAGGGGGACTGTTTGTTACATTGCTCCTGAGTATGGTGGAGGAGGGCAATTGTCTGAAAAGTGTGATGTGTACAGTTTTGGGGTTCTGCTTTTGGTTCTGGTGGCGGGGAGGCGGCCGCTGCAGGTGACCGCATCGCCGATTTCTGAGTTTGAGAGGGCCAATTTGATTTCCTGGGCCAGGCAGCTTGCTCACAATGGGAGGCTTTTAGATCTTGTTGACACTTCTATTCATTCATTGGATAAGGAGCAGGCGCTGCTCTGCATCACCATAGCCTTGTTGTGTTTGCAGAGGTGCCCAGGGAAGAGGCCTTCCATGAAGGAGGTTGTGGGAATGCTCAATGGGGAAGCTGATCCACCACATTTACCGTTCGAATTCTCACCGTCACCGCCGTCAAATTTCCTGTTCAAGGGACGGAAGAAGGCTCGAGACTAA	1929	0.5381	MPSRPPPPSPHAAVSAISHRREMILCGVIGGALFLTALIVSVTVFLYRKLSYNRTAPFEHNQRRFSYSVLRRATNSFSPSTKLGHGGFGSVHKATLPSGQTVALKVMDSPGSIQGEREFHNELTLCSNLRSPFVISLLGFSSDRRGRKLVLVYELMPNRSLQDALLDRRCPELMSWAKRFDIAVSVAMGLEYLHHSCEPPVIHGDIKPSNVLLDEDFGAKIGDFGLARVKAVEDLGMVEEKKEGVVEIAVEEFGVTEEGESVSVVDVDRSPESCPVRAVDYSDASPVGGDKLSVVSDGCFESVDSENVNLNKKKGGGGSGRDWWWRQESGAGGESGRVKDYVMEWIGSEIKKERPKSEWVDSCSSSSPKVENENGNVNGNEKSKKERKRLDWWASLDEEKVKSKVKKNRKPREWWKEEFCEELSNKSKMKKRGLEWWQREEEGVEQKKKRKSKGSRGSIDWWLDGLSGEIRNNGRRNSQDWGISGDVPKSGGISSTPSMRGTVCYIAPEYGGGGQLSEKCDVYSFGVLLLVLVAGRRPLQVTASPISEFERANLISWARQLAHNGRLLDLVDTSIHSLDKEQALLCITIALLCLQRCPGKRPSMKEVVGMLNGEADPPHLPFEFSPSPPSNFLFKGRKKARD	642

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3078g00003	642	SMART	serkin_6	77	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3078g00003	642	Gene3D	Transferase(Phosphotransferase) domain 1	156	249	-	-
	Vium3078g00003	642	Gene3D	Transferase(Phosphotransferase) domain 1	470	617	-	-
	Vium3078g00003	642	Pfam	Protein kinase domain	80	229	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3078g00003	642	Pfam	Protein kinase domain	480	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3078g00003	642	ProSitePatterns	Protein kinases ATP-binding region signature.	83	105	IPR017441	GO:0005524
	Vium3078g00003	642	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	201	213	IPR008271	GO:0004672\|GO:0006468
	Vium3078g00003	642	MobiDBLite	consensus disorder prediction	360	377	-	-
	Vium3078g00003	642	MobiDBLite	consensus disorder prediction	311	334	-	-
	Vium3078g00003	642	MobiDBLite	consensus disorder prediction	619	642	-	-
	Vium3078g00003	642	PANTHER	OS07G0586332 PROTEIN	1	641	IPR044576	-
	Vium3078g00003	642	Gene3D	Phosphorylase Kinase; domain 1	41	155	-	-
	Vium3078g00003	642	ProSiteProfiles	Protein kinase domain profile.	77	622	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3078g00003	642	SUPERFAMILY	Protein kinase-like (PK-like)	52	629	IPR011009	-
	Vium3078g00003	642	MobiDBLite	consensus disorder prediction	357	385	-	-
	Vium3078g00003	642	FunFam	Os07g0541700 protein	156	244	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3078g00003	Vium-Chr3078	20878	23120	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3078g00003	489	611	Receptor kinase-like Gene Family	AT3G58690	37.209	1.02e-13	71.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XI	Vium3078g00003		Pkinase	8.3e-27	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3078g00003	-		-	gmx:100814933	1050.43