Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3075g00002 ATGAGCATGCAAAAAGAGAGTCCTCTCATTAGACTCCACAGTTTCGACCAAGGCCATGCATGGCTCGCTCTCTTGCACCTCCTCATTCACATGTCACCGCCAGTAACCGGTCAACCGGTAAATCCGGCAATAGAACCCGACAGCAACAAATCCGTGATCGTCATCATGGTCATCATCGCCATAATGTTCCTCATCTCAGCCTTAATCTCTCTCTACTCTCGCAAATGCTCCGACCGACAAGCGCTGGCACGTGCCACACTCGACCTCGCCGCATCCACTGGCGCAACTGGTAACCCGTCGTCGCAAAGCGAACCCAGCGGTCTCAGCCAGGCCACCATAGAAACCTTCCCCACATTCCTCTACTCCGACGTGAAGAGTTTCAAAATCGGAAAAGACACTTTAGCATGCGCTGTGTGCTTGAGCGAGTTCCAAGACCACGATACCCTTCGCATGATCCCCAAATGTTGCCACGTGTACCACCCCAATTGCATCGACGTGTGGTTAGCTTCTCACACCACTTGTCCAGTGTGTCGCGCCAACCTCGTTCCAGAACCTGAAGACTTAGACACGAACACGAACATGCTACCCATGTTGTCCATTCAGGTACCCGATGAACATGAAGATGGAGACGAAAGTGGTGAACATGAACACGAGAGTGTTATCAGTGAGGAAGGGAAAAGAGGGCATGCTGAAGTGGAGTCACCGAAGGTGGATTTGCTTCGGAGGATTCACTCGTTGCATCAGAGTCGTCCATCACGGTCGAGATCCACTGGGTTCTTATCCTCTCTCTTGTTTCCGCGATCGAACTCCATGGGGCAATTGGCGCAGCCAGGGGAGAACTATGAGAGGTTTACGCTAAGGTTACCGGAGGAGGTACAAAGCCAGATGATGAACTCGAGACTTAAGCGTGCGAATAGTTGTGCATGCTTTACAAGAATGAACAGTGGAACGTGCGGGTATAGAACGAGAAGCGTGGGAAGTGGACGTGGAAGAGGGTGTGTGCAGTACGAGAGGTTCAATGGTGAGGAACAATGGGGTTTCACTTTGACCTCACCGAACCTCGTTAAAAACGGTTCGAATAGATCCTCCAGAAAATCAGTGGTAGATAATAATCCTAATGAATGA 1125 0.5067 MSMQKESPLIRLHSFDQGHAWLALLHLLIHMSPPVTGQPVNPAIEPDSNKSVIVIMVIIAIMFLISALISLYSRKCSDRQALARATLDLAASTGATGNPSSQSEPSGLSQATIETFPTFLYSDVKSFKIGKDTLACAVCLSEFQDHDTLRMIPKCCHVYHPNCIDVWLASHTTCPVCRANLVPEPEDLDTNTNMLPMLSIQVPDEHEDGDESGEHEHESVISEEGKRGHAEVESPKVDLLRRIHSLHQSRPSRSRSTGFLSSLLFPRSNSMGQLAQPGENYERFTLRLPEEVQSQMMNSRLKRANSCACFTRMNSGTCGYRTRSVGSGRGRGCVQYERFNGEEQWGFTLTSPNLVKNGSNRSSRKSVVDNNPNE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3075g00002 374 MobiDBLite consensus disorder prediction 204 234 - -
Vium3075g00002 374 SUPERFAMILY RING/U-box 130 186 - -
Vium3075g00002 374 CDD RING-H2_EL5-like 136 178 - -
Vium3075g00002 374 MobiDBLite consensus disorder prediction 352 374 - -
Vium3075g00002 374 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Vium3075g00002 374 FunFam E3 ubiquitin-protein ligase ATL6 97 184 - -
Vium3075g00002 374 PANTHER RING FINGER DOMAIN-CONTAINING 39 186 - -
Vium3075g00002 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 183 IPR013083 -
Vium3075g00002 374 SMART ring_2 136 177 IPR001841 -
Vium3075g00002 374 Pfam Ring finger domain 135 178 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3075g00002 Vium-Chr3075 58366 59543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3075g00002 49 299 Rapid Response to Elicitors AT2G35000 37.066 2.55e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3075g00002 K10664 - gmx:100814384 500.36