Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3075g00001 ATGGCCCTAGAGGCCGTGGTTTTCCCGCAAGATCCATTCACTTACCCTTGCAACAAAGACTACTTCTACTCGCTGTTGCACAACAATCTTCAAGAAGCAGAAAACAAAGCCTTTCTAGGCATCATCACCAACAACATAGACCACACTCTGCATGCAAATTGGGATTCTTCTTCTCCTTCCGCTTTGCAAAATATCAAAGACCAATGGGACTCACACTCCTCCCCTGAACCCTGCACCGTCGATCAATCTCTCCCCGCCGCCTTTCCTCCTCCTCCTCCTCCCTCCGAACCCACTCCCGGCCGCCGCAAACGCCGCCGCACCAAGAGCACCAAGAACAAGGAGGAGATCGAGAATCAAAGAATGACCCACATTGCAGTTGAACGCAATCGAAGAAAACAGATGAACGAGTACCTCGCCGTTCTAAGATCCCTGATGCCACCCTCTTATGTCCAAAGGGGTGATCAAGCATCTATTATTGGTGGAGCCATTAACTTCGTGAAGGAGCTGGAGCAGCTTCTGCAGTGCATGAAGGGGCAGCAGAGAACGAAGGAAAATGGCGGTGGCTTCTCTGACTCGTCATCACCCTTTGCCGAGTTCTTCATGTTCCCTCAGTATTCGACACGTGCGACACAGAACGGCAGAGGGTACCCTAGCACGTGCGAAGCACGGAGCCATTCATGGGCCGTGGCAGACATAGAAGTGACCCTTGTGGATGGCCATGCCAACATAAAGATACTCTCGAAGAAACAAGCGGGTTTGCTTCTGAAGATGGTTGTTGGCCTTCAAACTCTCGCCTTCACCATTCTCCACCTTAACGTTACCACTGTCGACGATATGGTCCTCACCTCGGTTAGTGTTAAGGTAGAGGAAGGGTGTCAGATGAACACAGTGGAAGAAATTGCAGGTGCGGTGCATGAATTATCCCGCAGGATTCAGGAGGAAGGCGTTTTGAGGTGA 957 0.511 MALEAVVFPQDPFTYPCNKDYFYSLLHNNLQEAENKAFLGIITNNIDHTLHANWDSSSPSALQNIKDQWDSHSSPEPCTVDQSLPAAFPPPPPPSEPTPGRRKRRRTKSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGQQRTKENGGGFSDSSSPFAEFFMFPQYSTRATQNGRGYPSTCEARSHSWAVADIEVTLVDGHANIKILSKKQAGLLLKMVVGLQTLAFTILHLNVTTVDDMVLTSVSVKVEEGCQMNTVEEIAGAVHELSRRIQEEGVLR 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3075g00001 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 169 IPR011598 GO:0046983
Vium3075g00001 318 Gene3D - 112 182 IPR036638 GO:0046983
Vium3075g00001 318 MobiDBLite consensus disorder prediction 56 80 - -
Vium3075g00001 318 CDD bHLH_AtFAMA_like 121 194 - -
Vium3075g00001 318 PANTHER MAX DIMERIZATION, MAD 71 314 - -
Vium3075g00001 318 MobiDBLite consensus disorder prediction 56 117 - -
Vium3075g00001 318 Pfam Helix-loop-helix DNA-binding domain 119 170 IPR011598 GO:0046983
Vium3075g00001 318 SMART finulus 124 175 IPR011598 GO:0046983
Vium3075g00001 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 181 IPR036638 GO:0046983
Vium3075g00001 318 FunFam Basic helix-loop-helix transcription factor 109 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3075g00001 Vium-Chr3075 32772 35449 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3075g00001 1 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.418 1.78e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3075g00001 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3075g00001 - - gmx:100797856 471.085