Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3074g00001 ATGGATTGGAAGAGATCTGCTTTGGAGTGCCAGAGAGTAAAGATCTGTGGATAAGTTCTGTTGGGATTTTTGTTGATCTGCATAATTCACACTTCAAGTGCCGTCACCGATCCCACTGATGTTGCTGCAATTAATAGCTTCTATGTTGCACTGGGATCCCCTGTCCTTCCTGGGTGGGTTGCTAGTGGAGGAGATCCATGTGGAGAAGGGTGGCAAGGCATTTCTTGTAATGGGTCATTCATACAAAAAATAGTTCTAAATGGTGCAAATTTGGGAGGAGAACTGGGAGATAAACTGTCAACTTTTGTTTCAATCTCAGTAATTGATCTAAGCAACAACAACATTGGAGGAAATATTCCATCTAGTTTGCCAGTTACCATGAAAAACTTTTTTCTTTCAGCCAACCAGTTTACTGGAAGTATTCCAACCTCTTTATCCACTCTGGCTGGACTGACAGACATGTCTCTTAACAACAATTTCTTAACTGGAGAATTACCGGATGCTTTTCAGTCACTTACGCAATTGATCAATCTTGATTTATCGCATAATAATTTGAGTGGAGCATTGCCTTCTTCTATGGATAACTTGTCATCTCTGACCACCCTACGCTTACAAAACAATCAATTGTCTGGGACACTTGATGTCTTACAAGACCTTCCTCTGAAAGATTTGAATATTGAGAACAACCAGTTTGCTGGCCCAATACCTCCAAAGTTGCTGAGCATCCCAACCTTCAGGCAAGCTGGAAACCCATTTAATGTTAATGGTACCCCTCCAGCTTCTTCACCTCGCTCCCCAGCACTAGCACCACCAGGAACTCCCATTTCTGGGGCACCACCGGGAACTCCCACCTCTGGGTCACCACCATCTTCTGGCCGTGTACCTACTAAACAGGCCGATGGACCAGCTGCAGCAAATGAATCGCACACTGGGAAATCCAAAAATTCCACAAAAAGGGTGGTTTGGATATCTATTGGTAGTGTGTTAGGATTCATTATTTTGTTACTAGGATTCATTCTCTTTATTCCAAGATGCAGCAGAAGAGAACGGGATGGCAGAAGGTCCAAGCATCAAATTGGTGCGTATGGGGCTGAAAGGGAAATGACCAGGGATAACGGGAGTTCAGTCCAACCACCTAGTCAAATGGAAAAAGGGGATGTTCCAAGGCCAAAAGAGGACCATCAGGCGGAGAATAGGACAGCCTGGGCTAATCCAAGGCAAAACGAAGCAAGAGAATGAGTGCAAAGAATGGCAACAATACCAAAGGCCAGAGATCATGAGATAGATATTAGTACACTAGAAGTATATTCAATGCCTCCTCCCCCTCACACCCCGCCACCTCCTCCCCCCCCACCTCCACCTCCTACTACTGAGAAGGTGACTGTTGAGCCAGCCACATCCCGCAGAGCAACTAACGTCACTACGCACAAAAAGAGTGCAGTTCCTCCTACTTTTGCGAAGTTTTTTGGTATTGCATCCCTTCAACAGTATACAAATAGCTTTTCTCAAGAAAATCTTATAGGAGGAGGCATGCTTGGTAATGTGTATAGAGCCGAGCTTCCTAATGGCAAGTTTCTTGCTGTAAAGAAACTGGACAAGAGAGCTCGGAGAAACCAGAAGGATGATGAATTTCTTGAATTGATCAATAGTATTGACAGAATAAGGCATGCAAATGTTGTTGAGCTTGTTGGATACTGTTCTGAGCGTCAGAGGCTTCTTATATTTGAGTACTGCAGTAATGGGTCACTGTATGATGCACTCCACTCAGACGATGACTTCAAAACCACACTCTCATGGATTACTAGAATTCGAATAGCTCTTGGGGCAGCCAGAGCCTTAGAATATCTGCATGAGCTATGTCAGCCACCTGTAGTACATAGAAATTTGAAGTCTGCCAATATTCTGCTTGATGATGATCTATCCGTGCGGGTCTCTGATTGTGGTTTAGCTCCATTAATAGCTTCAGGATCAGTCAGTCAGCTCTCGGGGAACCTGTTAACTGCTTATGGATATGGAGCTCCTGAATTTGAGTCTGGAATATACACATACCAAAGTGATGTGTACAGCTTTGGAGTGATCATGTTAGAACTTTTGACTGGCCGTCAGTCTCACGACAGGACACGTCCCCGGGGTGAGCAGTTTCTGGCCAGATGGGCAGTTCCCCAACTTCATGATATTGAAGCCTTATCGAACATGGTTGACCCTGCTTTGAATGGAAATTACCCAGCAAAATCATTGTCAAATTTTGCAGACATTATCTCTAGATGCCTTCAGTTGAGCCAGAATTTAGGCGCAGCAATGTCCGAGGTTGTCTTATACTTACTAAATTATGATAAGAAGAGTTCAGCTAGTGAATCAAATGAAAAATGA 2370 0.4397 MDWKRSALECQRVKICGXVLLGFLLICIIHTSSAVTDPTDVAAINSFYVALGSPVLPGWVASGGDPCGEGWQGISCNGSFIQKIVLNGANLGGELGDKLSTFVSISVIDLSNNNIGGNIPSSLPVTMKNFFLSANQFTGSIPTSLSTLAGLTDMSLNNNFLTGELPDAFQSLTQLINLDLSHNNLSGALPSSMDNLSSLTTLRLQNNQLSGTLDVLQDLPLKDLNIENNQFAGPIPPKLLSIPTFRQAGNPFNVNGTXPPASSPRSPALAPPGTPISGAPPGTPTSGSPPSSGRVPTKQADGPAAANESHTGKSKNSTKRVVWISIGSVLGFIILLLGFILFIPRCSRRERDGRRSKHQIGAYGAEREMTRDNGSSVQPPSQMEKGDVPRPKEDHQAENRTAWANPRQNEAREXVQRMATIPKARDHEIDISTLEVYSMPPPPHTPPPPPXPPPPPPTTEKVTVEPATSRRATNVTTHKKSAVPPTFAKFFGIASLQQYTNSFSQENLIGGGMLGNVYRAELPNGKFLAVKKLDKRARRNQKDDEFLELINSIDRIRHANVVELVGYCSEHXQRLLIFEYCSNGSLYDALHSDDDFKTTLSWITRIRIALGAARALEYLHELCQPPVVHRNLKSANILLDDDLSVRVSDCGLAPLIASGSVSQLSGNLLTAYGYGAPEFESGIYTYQSDVYSFGVIMLELLTGRQSHDRTRPRGEQFLARWAVPQLHDIEALSNMVDPALNGNYPAKSLSNFADIISRCLQLSQNLGAAMSEVVLYLLNYDKKSSASESNEK 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3074g00001 792 MobiDBLite consensus disorder prediction 462 480 - -
Vium3074g00001 792 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 37 264 - -
Vium3074g00001 792 ProSiteProfiles Protein kinase domain profile. 503 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3074g00001 792 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Vium3074g00001 792 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 83 774 - -
Vium3074g00001 792 MobiDBLite consensus disorder prediction 432 480 - -
Vium3074g00001 792 ProSiteProfiles Leucine-rich repeat profile. 198 220 IPR001611 GO:0005515
Vium3074g00001 792 SUPERFAMILY L domain-like 37 243 - -
Vium3074g00001 792 MobiDBLite consensus disorder prediction 439 461 - -
Vium3074g00001 792 Gene3D Ribonuclease Inhibitor 38 258 IPR032675 -
Vium3074g00001 792 MobiDBLite consensus disorder prediction 264 287 - -
Vium3074g00001 792 SUPERFAMILY Protein kinase-like (PK-like) 480 777 IPR011009 -
Vium3074g00001 792 Pfam Leucine rich repeat 128 185 IPR001611 GO:0005515
Vium3074g00001 792 Gene3D Transferase(Phosphotransferase) domain 1 581 792 - -
Vium3074g00001 792 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 581 791 - -
Vium3074g00001 792 MobiDBLite consensus disorder prediction 353 399 - -
Vium3074g00001 792 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 468 580 - -
Vium3074g00001 792 Gene3D Phosphorylase Kinase; domain 1 462 580 - -
Vium3074g00001 792 MobiDBLite consensus disorder prediction 249 313 - -
Vium3074g00001 792 Pfam Protein tyrosine and serine/threonine kinase 506 773 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3074g00001 Vium-Chr3074 76824 83883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3074g00001 26 783 Strubbelig Receptor Gene Family AT4G03390 59.922 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vium3074g00001 PK_Tyr_Ser-Thr 2.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3074g00001 - - mtr:25492087 1043.11