Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3070g00003 ATGAGGAATGCAAGTGTTGCAGCTGAAGCAGTGGAGCAAAACTCTAGAAGGAACAACGGAGTTGTTGATGAGAATGTTCCCTTGTTAGCAAAGGTTCAGGGGAGTGATGATGTTTCAGGGTTTGAAGAGTTTAATGGAGCTTCATTTTCTGGGGCAGTTTTCAACTTGTCAACCACAATTATTGGTGCTGGAATCATGGGGTTGCCAGCATGTGTGAAAAAGTTGGGGATGGTGCCTGGGCTTCTTGCTATAATCTTAACAGGTTTCTTGACAGAGAAGTCAATTGAGTTCCTGATTAGGAGTTCTGGGGCAGGGAATCTTCCCTCTTATGGGAGTCTCATGAGGGATGCTTTTGGAAAATTTGGAAAAGCTTTGGTGGAGATATTTGTTATAGTCAACAACATTGGTGTGTTGATTATTTACACGATTATACTTGGGGATGTGATTTCTGGAACATCTTCTGGTGGAACTCACCATTCTGGTCTCCTTGAAGGCTGGTTTGGAGTTCATTGGTGGACTGGAAGAACGTTTGTTGTTGCGTTTACAACAGTTGCTGTGTTTGCACCTTTGGTCAGTTTTAAGAGGATTGATTCATTGAAATTCACGTCTGCATTATCAGTTGGGCTAGCAGTAGTTTTTCTAGTGATTGCTGTTGGAATCTCAGTCTTCAAGATCATAGTCGGAGGCATTGGAATGCCCAGACTCTTTCCAATCATAACTGATATGGCATCAATTTTGGAACTGTTCACTGTAGTTCCTGTTCTTGTGACTGCCTATATCTGCCACCCCAATGTACACCCCATAGACAATGAACTGGAGGACTGCTCTCAGATGCATGGCGTTGTACGTACATCCCTTGCTCTGAGTGCTTCAGTGTACTTGCTGACAAGCTTCTTTGGGTTCCTCCTATTTGGTGAAGCAACACTTGATGATGTGCTTGCAAATTTTGACACTGATCTTGGAATTCCTTTGGGTTCTGTGCTCAATGATGCAGTTCGTTTCAGCTATGCTGCACATCTCGTGCTTGTATTTCCAGTTGTCTTCTATGGAATGCGTGTCAACCTAGATTCTCTTTTATTTCCATCATCCAGGCCTTTGTCTCAAGATAACATTAGATTTGCTTCAATTACTGTTACACTTGTTGCTGTTATCTTCCTTGGAGCAAATTTCATACCCAGCATTTGGGATATTTTCCAGTTTACTGGAGCAACAGCTGCTGTTTGCATAGCATTCATATTTCCAGCTGCCATCATTCTACGGGATCGACACAGCATAGCAACTAAAAGGGACAAGATTCTATCAGTCTTTATGATATTCTTGGCTGTCTTGTCAAATGCTGTGGCTTTATACAGTGATACTTATGCCTTGATCAAGAAGAACAAAACTTATACATGA 1395 0.4201 MRNASVAAEAVEQNSRRNNGVVDENVPLLAKVQGSDDVSGFEEFNGASFSGAVFNLSTTIIGAGIMGLPACVKKLGMVPGLLAIILTGFLTEKSIEFLIRSSGAGNLPSYGSLMRDAFGKFGKALVEIFVIVNNIGVLIIYTIILGDVISGTSSGGTHHSGLLEGWFGVHWWTGRTFVVAFTTVAVFAPLVSFKRIDSLKFTSALSVGLAVVFLVIAVGISVFKIIVGGIGMPRLFPIITDMASILELFTVVPVLVTAYICHPNVHPIDNELEDCSQMHGVVRTSLALSASVYLLTSFFGFLLFGEATLDDVLANFDTDLGIPLGSVLNDAVRFSYAAHLVLVFPVVFYGMRVNLDSLLFPSSRPLSQDNIRFASITVTLVAVIFLGANFIPSIWDIFQFTGATAAVCIAFIFPAAIILRDRHSIATKRDKILSVFMIFLAVLSNAVALYSDTYALIKKNKTYT 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3070g00003 464 Pfam Transmembrane amino acid transporter protein 47 448 IPR013057 -
Vium3070g00003 464 PANTHER AMINO ACID TRANSPORTER 43 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3070g00003 Vium-Chr3070 15141 20373 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3070g00003 11 463 Amino Acid or Auxin Permease AAAP Family AT5G38820 63.516 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3070g00003 K14207 - gmx:100791286 752.666