Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3069g00007 ATGGAGAAGGAACTGGTGGAATTGTATGACGCCGCGAAGAAGGCGGCGGACGCGGCCCTCTCCGGCGACGCTGAGCACGAGGAGAGCCGATGCATCGATGCCCTGGAACAGCTTAAGAAATTTCCCGTTAATTATAAGATTCTTGTTAACACTCAGGTAGGGAAACATCTTAAAATTCTCACTAAGCACCCAAGGCAGACAATTCGGGCTTTTGCTGTTGACCTAATTGAGATATGGAAAGGCATAATTATCAAGGAAACAAGCAAAAATAAAAACGGGGGTGTTGATAGTAAAGTTGAATCAGCTAATGGGGAGAGATCTAAACCTGGGAAAATGCAGAAAAGTCCTTCGGTGAAAGTTGAAAAAGGTGAAACTGTCAAGGCTGAGAGAAATGATAGGAATGGTACATCAAAGTCAGAAAGTATGAAAAAGGCACAAAATGATGTCAAGAATGAGAAAACTGATCGTGCTGCAAGTGTCAAGGTGGAAAAGTCAGCCAAGGAGGTAAAGCCATTCTCTGGAACAAAGAAATTTTCATCCAGTTCTGCAACTCCCCCAAAGCTAACAACTATGATCAAATCTAACGATGCAACGCGAGACAAAATAAGGGAACTTCTCCATGAGGCTTTGTCCAAGGTCTCTGGAGAGGCTGATGAAGATCTTGTAGAGATTGTCAATGCTTCTGATCCTATTCGAGTTGCTGTGACAGTGGAGTCTGTATTATTTGAAAAATGGGGTCCTTCAAATGGAGCGCAGAAGGTCAAGTACAGGTCCTTAATGTTTAAC 786 0.4326 MEKELVELYDAAKKAADAALSGDAEHEESRCIDALEQLKKFPVNYKILVNTQVGKHLKILTKHPRQTIRAFAVDLIEIWKGIIIKETSKNKNGGVDSKVESANGERSKPGKMQKSPSVKVEKGETVKAERNDRNGTSKSESMKKAQNDVKNEKTDRAASVKVEKSAKEVKPFSGTKKFSSSSATPPKLTTMIKSNDATRDKIRELLHEALSKVSGEADEDLVEIVNASDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFN 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3069g00007 262 CDD TFIIS_I 23 83 - -
Vium3069g00007 262 ProSiteProfiles TFIIS central domain profile. 198 262 IPR003618 GO:0006351
Vium3069g00007 262 SUPERFAMILY Elongation factor TFIIS domain 2 182 262 IPR036575 GO:0006351
Vium3069g00007 262 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 24 94 IPR035441 -
Vium3069g00007 262 MobiDBLite consensus disorder prediction 115 162 - -
Vium3069g00007 262 ProSiteProfiles TFIIS N-terminal domain profile. 1 86 IPR017923 -
Vium3069g00007 262 MobiDBLite consensus disorder prediction 90 162 - -
Vium3069g00007 262 Pfam Transcription factor S-II (TFIIS), central domain 195 262 IPR003618 GO:0006351
Vium3069g00007 262 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 96 IPR035441 -
Vium3069g00007 262 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 15 262 - -
Vium3069g00007 262 SMART TFS2_5 8 85 IPR003617 GO:0005634
Vium3069g00007 262 Pfam TFIIS helical bundle-like domain 34 83 IPR017923 -
Vium3069g00007 262 Gene3D - 174 262 IPR036575 GO:0006351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vium3069g00007 TFIIS_M 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3069g00007 K03145 - gmx:100811982 437.573