Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3066g00007 ATGAGAATCCCGTGTTGTTCGGTTTGCCAAACGCGTTACAACGAGGAGGAGAGAGTTCCTCTGCTGCTCCAATGCGGCCACGGCTACTGCAGAGAGTGTCTCTCTAGAATGTTCGGGCCCTCTTCGGACGCCACGCTGACGTGTCCCAAGTGCCGACACGTGTCCACCGTGGGGAACTCCGTGCAGGCGCTGCGGAAGAACTACGCGGTGCTCGCGCTGGTCCACTCCGCCATCACCACCGCCAACGGGGGTGGAGGGGGAGGGGAGAATTTCGACTGGGACTACACCGACGAGGAGGAGGAGGACGGGGGAGGGGAGGAGGATGAGGACGACGAGAAGCAGCGACGGAACAGCCGTGAGTCGCAGGCGTCGAGCTCTGGCGGGTGCGAGCCGGTGATCGAGGTCGGTGGCGGCGCGCACCAGGACCTGAAGTTGGTGCGGCGGATTGGAGAGGGGAGGAGGGCGGGAGTGGAGATGTGGATGGCGGTGATCAGCGGTGGCGGTGGTGTGGAAGGGGGACGGAGGTGCCGGCACAGCGTGGCGGTGAAGAAGGTGACTGTGGTGGAGGGGATGGATTTGGATTGGGTTCAGGGAAAGTTGGAGGATTTGCGTAGGGCTTCGATGTGGTGTAGGAATGTGTGCACTTTCCATGGGACAATGAGGGTGGAGGACAGTTTGTGCCTCGTGATGGATAAGTGCTATGGATCGGTTCAGTCCGAGATGCAGCGCAATGAGGGAAGGCTCACTTTGGAACAAGTCCTAAGATACGGGGCTGACATTGCCCGAGGGGTCGTTGAACTTCATGCTGCAGGTGTTGTTTGCATGAATTTAAAACCATCCAATCTTCTTCTTGACGCAAATGGTCATGCCGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAGCCTTCATGTTGGAAGGCACGACCAGAGTGTGACTCTGTGAAGATCCATTCCTGTATGGAATGTATAATGCTCAGCCCACATTATACAGCACCGGAGGCTTGGGAACCTGTGAAGAAGTCGTTAAATTTGTTTTGGGATGATGGAATAGGTATATCTTCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACGGGTTCCATTCCTTGGGCAGGTTTAAGTGCAGAGGAAATCTATCGAGCGGTTGTTAAAGCTAAGAAACTGCCTCCACAGTATGCTAGTGTGGTTGGAGGTGGAATTCCGAGGGAATTGTGGAAGATGATTGGAGAGTGCTTGCAATTCAAGCCATCTAAGAGGCCTACTTTTAGCGCTATGCTGGCAATATTTCTCCGTCATTTGCAGGAAATACCACGTAGCCCTCCTGCAAGCCCTGATAATGGCTTAGATAATAAGGGCTCTGTATCAACTGTGATCGAGCCTTCACCTGTACCTGAATTGGAAGTTCCTCAGGAAAACCCTAACCATCTTCATCGACTTGTGTCTGAAGGAGATACTGCAGGTGTTAGGGATCTTCTTGCAAAGGTTGTATTAGAAAATGGCAGCAACTACCTAACTTCGTTATTGGAAGCACAAAATGCTCATGGACAAACAGCTCTCCATTTAGCTTGTAGACGGGGCAGTGCAGAACTTGTCGAGACAATTTTGGAGTATAGAGAAGCAAATGTTGATGTATTGGACAAAGATGGAGATCCTCCTCTTGTTTTTGCATTAGCAGCTGGGTCCCTAGAATGTGTTTGTAGCCTTATCAAAAGAAATGCTAATGTGCAGTCAAGATTGAGAGATGGTGTTGGTCCATCTGTAGCTCACGTTTGTGCCTATCATGGCCAGCCAGATTGTATGCGAGAATTACTATTAGCCGGAGCTGATCCTAATGCGGTGGATGATGAAGGTGAATCTGTTCTGCATAGAGCAATTTCCAAGAAATACACAGACTGTGCACTTGTAATATTGGAGAATGGAGGATGTAAATCAATGTCCATCGTGAATTCAAAGAACCTGACACCACTGCACTTGTGTGTGGCAACATGGAATGTTGCTGTTGTGAAGAGATGGGTTGAAGTTGCAACTTCTGATGAGATTGCTGAAGCAATTGACATACGAAGCCCTATTGGCACTGCATTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAGAAAGAGGGCAGAGAACTGGTGCAGATACTGCTTGCAGCTGGAGCTGATCCCTCTGCTCAAGATTCACAAAATGGGAGGACAGCATTGCATACAGCTGCTATGACTAATGATGTCGACTTGGTTCAGGTTATTCTGGCTGCTGGGGTTGATGTGAACATTCGCAATGTGCACAACAGTATTCCTCTTCACTTGGCCTTAGCTAGGGGTGCTAAGGCATGTGTTGGACTGCTTCTAGCTGCTGGAGCAGATTATAATTTGCAGGATGACGATGGTGACAATGCTTTCCATATAGCAGCTGAGACAGCAAAAATGATTCGTGAAAATATGAACTGGCTTATTATTATGCTAATGAATCCTGATGCTGATATTGAAGTCAGAAACCACAGTGGCAAGACGCTACGTGACATTTTGGAGGCTCTCCCCCGAGAATGGTTATCCGAAGATCTGATAGAAGCACTCTCAAATAGGGGAGTTCATTTGTCTCCTACATCATTTGAAGTGGGAGAGTGGGTGAAGTTTAAAAAATCTGTCACAACTCCAACACATGGATGGCAAGGTGCTAATCCACAAAGTGTTGGTTTTGTGCAAAGTGTTCCAGACAAAGATAATCTCGTTGTTTCATTTTGTTCTGGAGAGGTTCATCTTCTGGCAAATGAAGTTATAAAAGTCATTCCATTGGACAGGGGACAACATGTACAACTGAAAGAAGATGTAAAAGAGCCTAGATTTGGTTGGCGTGGGCAGTCACGTGACAGCATTGGGACAGTATTATGTGTTGACGATGATGGAATTCTCCGTGTTGGGTTTCCCGGAGCATCTAGAGGATGGAAAGCTGACCCAGCAGAGATGGAACGTGTTGAAGAATTCAAGGTTGGAGACTGGGTTCGCATTCGTCCAACTCTTACATCTGCAAAGCATGGACTAGGATCTGTGACTCCAGGAAGCATTGGCATTGTATATTGTATACGGCCAGACAGCAGTCTATTAATAGAACTGAGTTATCTTCCAAATCCATGGCATTGTGAGCCAGAGGAGGTTGAGCATGTTGCTCCTTTTAGGATTGGTGATCGGGTATGCGTGAAACGGTCTGTTGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAGAATAAGCGAGATTGAGAATGATGGTCTTTTAATTATAGAAATACCAAATCGACCCATACCATGGCAAGCTGATCCCTCGGATATGGAGAAGGTGGAAGATTTCAAGGTTGGAGATTGGGTAAGAGTGAAAGCTTCAGTGTCTTCTCCAAAATATGGATGGGACGATATTACAAGGAATAGCATTGGTGTAATTCATGGCCTGGAAGAGGATGGCGATATGGTTGTTGCTTTTTGCTTCAGAAGTAAGCCTTTTTCTTGCTCAGTCACTGATGTGGAGAAAGTTCCTCCATTTGAGGTGGGACAAGAAATTCATGTGATTGCATCAGTTACTCAGCCTCGTCTTGGGTGGTCAAATGAATCACCAGCTACCGTTGGAAAAGTAGTGAGAATAGATATGGATGGTGCTCTCAATGTGAGGGTCACTGGTAGGCAGAGCTTGTGGAAAGTTTCTCCTGGAGATGCAGAGCGGCTTCCAGGATTTGAAGTTGGGGATTGGGTTCGCTCAAAACCAAGCCTGGGAACCAGACCAAGCTATGACTGGAATAGTGTTGGGAGAGAAAGTTTAGCTGTTGTGCATAGCGTACAGGATTCTGGATACTTGGAGTTGGCTTGCTGTTTTCGGAAAGGGAAGTGGATCACTCATTATACAGATGTTGAAAGGGTTCCTAGCTTTAAAGTTGGGCAGTATGTTAGGTTCCGAACTGGTTTGGTTGAACCAAGGTGGGGCTGGAGAGGAGCTCGGCCTGAATCTCAAGGGGTTATAACCAGTATTCATGCTGATGGAGAAGTCAGGGTCGCATTTTTTGGTCTTCCAGAACTGTGGAGAGGAGATCCTTCAGACCTTGAGATCGAACAAATATTTGAAGTGGGAGAGTGGGTGAGGTTGACAGAAAATGCAAATAATTGGAAATCAATTGGACCAGGTAGTGTTGGTGTGGTTCAAGGAATAGGGTATGAAGGAGATGAATTGGACAGAAGCATTTTTGTTGGATTTTGTGGGGAGCAAGAAAAGTGGGTAGGACCTACTTCACATCTTGAAAGATTTGACAAACTCTTCGTTGGACAGAAGGTTAGAGTGAAACAATATGTGAAGCAACCAAGATTTGGATGGTCAGGGCATACCCATGCTAGTCTCGGGACCATACAGGCTATTGATGCCGATGGAAAGCTTCGAATATACACTCCAGCAGGATCCAGAACATGGATGTTGGACCCATCAGAAGTGGAGGTGGTAGAAGAGAAGGAGCTCTGTATTGGTGACTGGGTGAGGGTTAAAGCTTCGGTTTCAACCCCAACACACCATTGGGGGGAAGTGAGTCATTCAAGCATTGGAGTTGTGCACAGAATGGAAGATGAAGATCTTTGGGTGGCTTTCTGTTTCATGGAGAGGCTATGGCTTTGCAAGGCTTGGGAAATGGAACGGATTAGGCCATTTAAAGTGGGTGACAAGGTAAGGATCAGAGATGGACTGGTGAACCCACGTTGGGGATGGGGAATGGAGACACATGCTAGCAAGGGAGAGGTTTTAGGGGTAGATGCAAATGGAAAACTAAGAATAAAATTCCGGTGGAGGGAAGGGAGGCCCTGGATAGGAGATCCTGCTGATCTTGCCCTTGAGGAAGACTGA 4905 0.4754 MRIPCCSVCQTRYNEEERVPLLLQCGHGYCRECLSRMFGPSSDATLTCPKCRHVSTVGNSVQALRKNYAVLALVHSAITTANGGGGGGENFDWDYTDEEEEDGGGEEDEDDEKQRRNSRESQASSSGGCEPVIEVGGGAHQDLKLVRRIGEGRRAGVEMWMAVISGGGGVEGGRRCRHSVAVKKVTVVEGMDLDWVQGKLEDLRRASMWCRNVCTFHGTMRVEDSLCLVMDKCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSVKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISSESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKAKKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFSAMLAIFLRHLQEIPRSPPASPDNGLDNKGSVSTVIEPSPVPELEVPQENPNHLHRLVSEGDTAGVRDLLAKVVLENGSNYLTSLLEAQNAHGQTALHLACRRGSAELVETILEYREANVDVLDKDGDPPLVFALAAGSLECVCSLIKRNANVQSRLRDGVGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAISKKYTDCALVILENGGCKSMSIVNSKNLTPLHLCVATWNVAVVKRWVEVATSDEIAEAIDIRSPIGTALCMAAASKKDHEKEGRELVQILLAAGADPSAQDSQNGRTALHTAAMTNDVDLVQVILAAGVDVNIRNVHNSIPLHLALARGAKACVGLLLAAGADYNLQDDDGDNAFHIAAETAKMIRENMNWLIIMLMNPDADIEVRNHSGKTLRDILEALPREWLSEDLIEALSNRGVHLSPTSFEVGEWVKFKKSVTTPTHGWQGANPQSVGFVQSVPDKDNLVVSFCSGEVHLLANEVIKVIPLDRGQHVQLKEDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVAPFRIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWDDITRNSIGVIHGLEEDGDMVVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHVIASVTQPRLGWSNESPATVGKVVRIDMDGALNVRVTGRQSLWKVSPGDAERLPGFEVGDWVRSKPSLGTRPSYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVERVPSFKVGQYVRFRTGLVEPRWGWRGARPESQGVITSIHADGEVRVAFFGLPELWRGDPSDLEIEQIFEVGEWVRLTENANNWKSIGPGSVGVVQGIGYEGDELDRSIFVGFCGEQEKWVGPTSHLERFDKLFVGQKVRVKQYVKQPRFGWSGHTHASLGTIQAIDADGKLRIYTPAGSRTWMLDPSEVEVVEEKELCIGDWVRVKASVSTPTHHWGEVSHSSIGVVHRMEDEDLWVAFCFMERLWLCKAWEMERIRPFKVGDKVRIRDGLVNPRWGWGMETHASKGEVLGVDANGKLRIKFRWREGRPWIGDPADLALEED 1634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3066g00007 1634 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Vium3066g00007 1634 Gene3D Transferase(Phosphotransferase) domain 1 233 452 - -
Vium3066g00007 1634 ProSiteProfiles Ankyrin repeat region circular profile. 736 767 - -
Vium3066g00007 1634 ProSiteProfiles Ankyrin repeat region circular profile. 769 801 - -
Vium3066g00007 1634 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Vium3066g00007 1634 SUPERFAMILY Ankyrin repeat 517 844 IPR036770 -
Vium3066g00007 1634 MobiDBLite consensus disorder prediction 85 135 - -
Vium3066g00007 1634 PRINTS Ankyrin repeat signature 718 732 IPR002110 GO:0005515
Vium3066g00007 1634 PRINTS Ankyrin repeat signature 522 537 IPR002110 GO:0005515
Vium3066g00007 1634 Pfam Mind bomb SH3 repeat domain 1127 1245 IPR040847 -
Vium3066g00007 1634 Pfam Mind bomb SH3 repeat domain 928 995 IPR040847 -
Vium3066g00007 1634 Pfam Mind bomb SH3 repeat domain 1057 1121 IPR040847 -
Vium3066g00007 1634 Pfam Mind bomb SH3 repeat domain 1510 1629 IPR040847 -
Vium3066g00007 1634 Pfam Mind bomb SH3 repeat domain 1380 1501 IPR040847 -
Vium3066g00007 1634 Pfam Mind bomb SH3 repeat domain 1253 1374 IPR040847 -
Vium3066g00007 1634 SUPERFAMILY RING/U-box 5 61 - -
Vium3066g00007 1634 FunFam E3 ubiquitin-protein ligase KEG 461 691 - -
Vium3066g00007 1634 Gene3D - 777 852 IPR036770 -
Vium3066g00007 1634 Pfam RING-type zinc-finger 6 49 IPR027370 -
Vium3066g00007 1634 ProSiteProfiles Ankyrin repeat profile. 521 554 IPR002110 GO:0005515
Vium3066g00007 1634 MobiDBLite consensus disorder prediction 92 108 - -
Vium3066g00007 1634 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 1 1633 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Vium3066g00007 1634 ProSiteProfiles Ankyrin repeat region circular profile. 521 543 - -
Vium3066g00007 1634 SMART ring_2 6 51 IPR001841 -
Vium3066g00007 1634 FunFam E3 ubiquitin-protein ligase KEG 234 450 - -
Vium3066g00007 1634 FunFam E3 ubiquitin-protein ligase KEG 735 868 - -
Vium3066g00007 1634 CDD RING-HC_KEG-like 3 59 - -
Vium3066g00007 1634 ProSiteProfiles Ankyrin repeat profile. 590 622 IPR002110 GO:0005515
Vium3066g00007 1634 SMART ANK_2a 521 551 IPR002110 GO:0005515
Vium3066g00007 1634 SMART ANK_2a 623 654 IPR002110 GO:0005515
Vium3066g00007 1634 SMART ANK_2a 590 619 IPR002110 GO:0005515
Vium3066g00007 1634 SMART ANK_2a 696 731 IPR002110 GO:0005515
Vium3066g00007 1634 SMART ANK_2a 658 689 IPR002110 GO:0005515
Vium3066g00007 1634 SMART ANK_2a 769 798 IPR002110 GO:0005515
Vium3066g00007 1634 SMART ANK_2a 802 837 IPR002110 GO:0005515
Vium3066g00007 1634 SMART ANK_2a 736 765 IPR002110 GO:0005515
Vium3066g00007 1634 SMART ANK_2a 555 584 IPR002110 GO:0005515
Vium3066g00007 1634 Pfam Ankyrin repeats (3 copies) 715 800 IPR002110 GO:0005515
Vium3066g00007 1634 Pfam Ankyrin repeats (3 copies) 510 583 IPR002110 GO:0005515
Vium3066g00007 1634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Vium3066g00007 1634 SUPERFAMILY Protein kinase-like (PK-like) 137 449 IPR011009 -
Vium3066g00007 1634 ProSiteProfiles Ankyrin repeat profile. 769 801 IPR002110 GO:0005515
Vium3066g00007 1634 ProSiteProfiles Protein kinase domain profile. 143 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3066g00007 1634 Gene3D - 651 776 IPR036770 -
Vium3066g00007 1634 ProSiteProfiles Ankyrin repeat profile. 736 768 IPR002110 GO:0005515
Vium3066g00007 1634 Pfam Ankyrin repeats (many copies) 593 640 IPR002110 GO:0005515
Vium3066g00007 1634 Pfam Protein kinase domain 177 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3066g00007 1634 Gene3D - 460 650 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3066g00007 Vium-Chr3066 68965 86912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3066g00007 167 469 MAP Kinase Kinase Kinase AT1G53570 25.080 4.39e-18 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Vium3066g00007 Pkinase 7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3066g00007 K16279 - gmx:100777576 3105.46