Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3066g00002 ATGGAGGAGAAATCAGAGAAGCAAGATGATAGCCACCCGTCTCTCTTCTTCTCGGATCATGCCACCATCAAGGAAGAGAATTCTCCAAGAAAAGCCATTGGTGGTGGCAGTGATAGGCTGAAGAGAGATGAATGGAGTGAAGGGGCTGTGTCAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCTCAGAAACAGAGCCAAACTCAAGGGCCATGACTGGGAAGATGTTGCAAAACATGTCTCATCAAGAGCCAACTCCACCAAGTCACCAAAGACACAGACTCAGTGCAAGAACAAGATTGAGTCCATGAAAAAAAGGTACAGATCAGAGTCTGCAACCACTGCCGATGCATCATCTTGGCCTTTGTACTCTCGCCTTGATCTTCTCCTGCGTGGCACAGGACCAATATCTTCACTCCCGCCAACACCAAATCCAACACCAACGCCAACCATACCACCATCATTTCAACCACCACACGCCACCACCAATAGTAACCAGGCTCTGGTGTTGTTGGATCCTCCTTCACTGGCTGTCTCACAAGCTCCTCCTTCTGCTGCTCCTCCACCACCCACACAAAACTCTCACGGATCCAATGGTGTTGAAAGACTAGTCAAGGAAGATGGGTTAGGAGGCAAGTCATGTGAGCATGTATCTGAGAAGAATGTGATGGACTCGGATAGTAGCACACCTGCTCTATACAGTGAAAAGGAGAAGGTGAGATGCAACAAGAGGAAGATGAAAAGTGAGAAGAACAAGAGGGTGAGAAGGAACAGTAACAGTAATAACAATAACCAAAACAGTGAAGACATGGAGATAGCAGAAAGCATAAGGTGGCTAGCAGAAGTGGTAATGAGGTCAGAACAAAGCAGAATGGAGACAATGAAAGAGATTGAGAAGATGAGGGTTGAAGCTGAGGCAAAGAGAGGGGAGATGGAGCTGAAGAGAACTGAAATCATAGCCAACACTCAACTAGAGATTGCTAGGATCTTTGCAAGTGTCAATAAAGGTGTTGATTCTTCACTAAGAATTGGAAGAAGTTCATCATGA 1050 0.4638 MEEKSEKQDDSHPSLFFSDHATIKEENSPRKAIGGGSDRLKRDEWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVAKHVSSRANSTKSPKTQTQCKNKIESMKKRYRSESATTADASSWPLYSRLDLLLRGTGPISSLPPTPNPTPTPTIPPSFQPPHATTNSNQALVLLDPPSLAVSQAPPSAAPPPPTQNSHGSNGVERLVKEDGLGGKSCEHVSEKNVMDSDSSTPALYSEKEKVRCNKRKMKSEKNKRVRRNSNSNNNNQNSEDMEIAESIRWLAEVVMRSEQSRMETMKEIEKMRVEAEAKRGEMELKRTEIIANTQLEIARIFASVNKGVDSSLRIGRSSS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3066g00002 349 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 28 334 IPR044823 -
Vium3066g00002 349 MobiDBLite consensus disorder prediction 201 223 - -
Vium3066g00002 349 MobiDBLite consensus disorder prediction 135 163 - -
Vium3066g00002 349 MobiDBLite consensus disorder prediction 139 157 - -
Vium3066g00002 349 FunFam Trihelix transcription factor ASIL2 45 110 - -
Vium3066g00002 349 Pfam Myb/SANT-like DNA-binding domain 42 129 IPR044822 -
Vium3066g00002 349 MobiDBLite consensus disorder prediction 23 41 - -
Vium3066g00002 349 MobiDBLite consensus disorder prediction 178 270 - -
Vium3066g00002 349 Coils Coil 295 315 - -
Vium3066g00002 349 Gene3D - 45 110 - -
Vium3066g00002 349 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3066g00002 Vium-Chr3066 24883 27301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3066g00002 5 330 Trihelix Transcription Factor Family AT3G14180 25.469 3.56e-22 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium3066g00002 Myb_DNA-bind_4 8.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3066g00002 - - gmx:100799917 458.759