Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3066g00001 ATGGACACGAAATCGTTAACAATCCGTACACTGGTCTCCTCCCTCGCTTCCTCCTCCGATCAAACCCGTCTCGCCGCACTCCGCCACCTCCGCCGCACCTCCAACGAGGACCCCGCCGCCCGCCCCCTCATCTCCGCCGCCGGCGCCGTCCCCCTCCTCGCCTCCGCCCTCTACTCCCCCTCCCACTCCATCCAAGAACACGCCGCCGCCACTGTCCTCAACCTCTCCATCTCCGACCGCCTACCCCTCCTGTCCTGCCCCGCCCTCCTACCCGCCCTCGCCCACATCCTCTCCCGCCACGCCACCTCCTCCGCCCCATCCGCCGTCCAATCCGTCGCCGCGACCCTCCACAGCCTCCTCGCCGTGGTAGCCGAGTTCCGCCCCACCGTCGGTGCAAAACCCGAAATTCTTCGTGCCCTCATCAGCATAATGAGTGATCCCGATTCGCTGACGAGGACGATCAAGGATGCTCTGAAAGCATCTTTCGGAATTGCACTCTACCCGCCGAGCCGAACAGCACTGGTCCGGCTGGGAGCAGTTCCCGTGCTCTTCGCTCTGGTGGCGAAGGACAAGGACGGGAAGAGAAAAGTTGGCATAATTGAGGATGCGACGGCGGTGATCGCGCAGATTGCGGGGTGTGAGGAGAGCGAGGACGCGTTTCTTAAGGTTTCGGGGGTTTCTAGGTTGGCCATGATGCTGTGTTCGGAAAGTGGAAACTGTAGTTTGAGGACAAAGGAGAATGCTGTTGCGGCGTTGTTGAATCTGGTGAGATATGGGAGTGAGAGAGTAGTTGGGGAGGTTAAGAACAAGGTTGCGTCCTTGGATGGGATCTCCTACGTGCAGGAACACGGTAGCCCCAAAGGGAAGAGCAAAGCCGTGGCTTTTTTCAAGCTTCTGCTTGATGGTGGAAGCAGTGCTGAAATTGCTCAAGATTTGTATCCTGTGCACTCTGATTAG 957 0.5935 MDTKSLTIRTLVSSLASSSDQTRLAALRHLRRTSNEDPAARPLISAAGAVPLLASALYSPSHSIQEHAAATVLNLSISDRLPLLSCPALLPALAHILSRHATSSAPSAVQSVAATLHSLLAVVAEFRPTVGAKPEILRALISIMSDPDSLTRTIKDALKASFGIALYPPSRTALVRLGAVPVLFALVAKDKDGKRKVGIIEDATAVIAQIAGCEESEDAFLKVSGVSRLAMMLCSESGNCSLRTKENAVAALLNLVRYGSERVVGEVKNKVASLDGISYVQEHGSPKGKSKAVAFFKLLLDGGSSAEIAQDLYPVHSD 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3066g00001 318 SUPERFAMILY ARM repeat 7 263 IPR016024 -
Vium3066g00001 318 PANTHER U BOX DOMAIN-CONTAINING 8 299 - -
Vium3066g00001 318 Gene3D - 2 297 IPR011989 -
Vium3066g00001 318 SMART arm_5 37 77 IPR000225 GO:0005515
Vium3066g00001 318 SMART arm_5 167 212 IPR000225 GO:0005515
Vium3066g00001 318 SMART arm_5 213 257 IPR000225 GO:0005515
Vium3066g00001 318 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 48 76 IPR000225 GO:0005515
Vium3066g00001 318 Pfam Armadillo/beta-catenin-like repeat 40 76 IPR000225 GO:0005515
Vium3066g00001 318 FunFam ARM repeat superfamily protein 2 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3066g00001 Vium-Chr3066 19000 19956 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3066g00001 2 297 U-box Gene Family AT2G28830 27.090 1.05e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3066g00001 - - gmx:100803111 466.848