Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3062g00020 ATGGCTAGTGTTATGACAGAGAAAGTGAAGCTTCTTGTGGCATTACTTACCCTGCAGCTCTGCTTTGCAGGATATCACATTGTGTCTAGACTTGCACTAAATATTGGAGTCAGCCAAGTTGTTTACCCCGTTTATCGAAATTTGATTGCTTTGCTTTTGTTAAGCCCATTTGCTTATGTGTTAGAGAAGAATCAAAGACCACCCCTCACTTTATCTTTACTGGTTCAGTTCTTCCTACTTGCATTACTGGGGATCACAGCAAACCAAGGGTTTTACTTGCTGGGATTATACTATGCTTCTCCAACTTTTGCTTCTGCATTGCAAAACTCAGTTCCTGCAATCACTTTTGTCTTGGCTTTGGCTTTAAGGCTTGAGGAAGCCAACATCACAAGGAGAGATGGATTGGCAAAAGTTCTTGGAACCATTGCTAGTGTGGGGGGTGCCACAGTAATTACTCTTTACAAAGGTCCTCCTCTTCTTCACCTGCAGATGGACCTAACACAAGGAGACACTTTAGAAGTAGATCAATCAACAAAAACGCAAAATTGGACTTGGGGCTGCATATACTTGCTTGGACATTGTCTGTCATGGGCTGGCTGGATAGTTTTTCAGGCTCCTGTGGTGAAGAAGTATCCAGCAAAACTAACCCTCACTTCGTTTACATGCTTCTTTGGATTGATCCAGTTCTTGATCATAGCAGCCTTTGCAGAAGATGACTTGGAGAATTGGAAGATACAGTCACTAGAGGAGCTTTTTATTATCCTATATGCAGGAATTATAGCATCTGGTGTTGTCATATCTCTCCAAACATGGTGTATTCAAAAGGGTGGTCCTGTGTTTGTTGCTGTCTTCCAGCCTGTGCAAACTATTCTAGTTGCTGTCATGGCAGCCCTAATTCTTGGTGATCAGTTATACTCAGGAGGGCTTATTGGTGCAATTCTCATTGTGCTTGGTCTATACTTAGTCCTATGGGGCAAAACCAACGAAAAAAAAGTGAGAGAGTCATCACCATCACTAACAAACCCCTTGCTTAAGGCAGAGGAAGAGAATAAAGAAATTGATGCAGCTTCCAAGGACATACCATGA 1086 0.4227 MASVMTEKVKLLVALLTLQLCFAGYHIVSRLALNIGVSQVVYPVYRNLIALLLLSPFAYVLEKNQRPPLTLSLLVQFFLLALLGITANQGFYLLGLYYASPTFASALQNSVPAITFVLALALRLEEANITRRDGLAKVLGTIASVGGATVITLYKGPPLLHLQMDLTQGDTLEVDQSTKTQNWTWGCIYLLGHCLSWAGWIVFQAPVVKKYPAKLTLTSFTCFFGLIQFLIIAAFAEDDLENWKIQSLEELFIILYAGIIASGVVISLQTWCIQKGGPVFVAVFQPVQTILVAVMAALILGDQLYSGGLIGAILIVLGLYLVLWGKTNEKKVRESSPSLTNPLLKAEEENKEIDAASKDIP 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3062g00020 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 327 - -
Vium3062g00020 361 MobiDBLite consensus disorder prediction 333 361 - -
Vium3062g00020 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 153 - -
Vium3062g00020 361 PANTHER WAT1-RELATED PROTEIN 12 335 IPR030184 GO:0016020|GO:0022857
Vium3062g00020 361 MobiDBLite consensus disorder prediction 345 361 - -
Vium3062g00020 361 Pfam EamA-like transporter family 185 323 IPR000620 GO:0016020
Vium3062g00020 361 Pfam EamA-like transporter family 14 152 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3062g00020 Vium-Chr3062 118872 121110 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3062g00020 4 355 Nodulin-like Gene Family AT3G18200 67.227 1.91e-175 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3062g00020 - - gmx:100812601 628.246