Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3062g00006 ATGTCAGAACTCGATCTGTCCAAGAAAGTAGCCGATAGGTATCTCAAGCGTGAGATTCTGGGTGAAGGTACATACGGGGTTGTGTACAAAGCCATCGATACGCAGACAGGGCAGACTGTGGCTATTAAGAAGATCCGGCTTGGCAAGCAGAAAGAAGGGGTCAATTTTACAGCTCTCAGAGAAATTAAACTGCTTAAGGAGCTCAAAGATCCAAACATTATTGAGTTGATTGATGCCTTTCCACATAAAGGAAATTTACATCTTGTGTTTGCCTTCATGGAGACAGACCTTGAAGCTGTTATACGGGACCGGAATATTGTTCTTTCACCTGGTGATATAAAATCTTACCTTCAGATGACACTTAAAGGCCTTGCTGTTTGCCACAAGAAATGGGTGTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCTAACGGACAACTGAAACTTGCGGATTTTGGTTTAGCTAGGGTATTTGGAAGCCCAGACCGCAGATTCACTCATCAGGTGTTTGCAAGGTGGTATAGAGCACCTGAACTATTATTTGGTACCAAGCAGTATGGTCCAGGGGTAGATGTTTGGGCCGCAGCCTGTATTTTTGCTGAACTTCTTCTTCGTCGACCCTTCTTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAAATTTTCGCAGCATTTGGAACTCCATCTCCTTCTCAGTGGCCCGATATGATCTACCTACCTGATTATGTTGAATATCAACATGTTCCTTCTCCACCTTTGCGTTCTTTGTTTCCAATGGCAAGTGACGATGGTTTAGATTTGTTGTCAAAGATGTTTACCTATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCATTAGAGCACAGGTACTTCTCTTCTGCACCTCTGCCCACAGATCCTGTTAAACTTCCAAGACCTGCTCCTAAGAAGGAATCTAAGGTTTCGGATGTAATTTCAAACGAAGGTCCTACGGTCTTGTCACCTCCTAGAAAGTCTAGGAGAGTAATGCCAGGGCGTGATGGGTCTGAAGGCAACTCTTTGCAAGGAGATAAGTTTGATGATAGTGTTAATGTCAGACAGGCAGCTGCTGATAATACAGGCAAAAATGAGCCAGTTCCAATGTCCCTAGATTTTTCTCTTTTTGGATTGAAACCTCCAAATAGACCTACAATTACCAGTGCTGACAGATCACATTTAAAAAGAAAGTTAGATCTAGAATTTTAG 1233 0.4225 MSELDLSKKVADRYLKREILGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFAFMETDLEAVIRDRNIVLSPGDIKSYLQMTLKGLAVCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARVFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSPSQWPDMIYLPDYVEYQHVPSPPLRSLFPMASDDGLDLLSKMFTYDPKARISVQQALEHRYFSSAPLPTDPVKLPRPAPKKESKVSDVISNEGPTVLSPPRKSRRVMPGRDGSEGNSLQGDKFDDSVNVRQAAADNTGKNEPVPMSLDFSLFGLKPPNRPTITSADRSHLKRKLDLEF 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3062g00006 410 MobiDBLite consensus disorder prediction 388 410 - -
Vium3062g00006 410 FunFam Cyclin-dependent kinase D-1 5 94 - -
Vium3062g00006 410 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Vium3062g00006 410 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Vium3062g00006 410 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3062g00006 410 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3062g00006 410 PANTHER CELL DIVISION PROTEIN KINASE 12 300 - -
Vium3062g00006 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vium3062g00006 410 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Vium3062g00006 410 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Vium3062g00006 410 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Vium3062g00006 410 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3062g00006 410 MobiDBLite consensus disorder prediction 300 358 - -
Vium3062g00006 410 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3062g00006 Vium-Chr3062 41061 45637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3062g00006 8 410 Core Cell Cycle Gene Families AT1G73690 76.238 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Vium3062g00006 Pkinase 3.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3062g00006 K02202 - gmx:100814263 799.275