Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3060g00003 ATGTCGTCTCAGGAATCAGACAAAACGACGTCCACGGAGAGTGCGTTCGACGCGCCGGCGGCGTCGCGGCTCGTGATGGAGTTGCGTGGAGCCTTCGCTACGGGCAAAACTCGCAGTTACGATTGGCGAGTGACGCAGCTCAAAGCGCTCGAGAAACTCGTCGCCGATCACGAGCCGGAGATCATCGACGCACTCCGAAAAGACCTCGCGAAGCCGCCGCTCGAAACTGTGGCTTACGAGATTGCTATGTTGAAAAACTCAAGTAAAGTTGCGCTCAAAGAATTGAAACATTGGATATATCCCGAAAAGGTCAAAACTTCACTCGCAACTTTTCCTTCTTCAGCTGAAATAGTATCTGAGCCACTGGGGGTTGTGCTAGTCATCTCGGCATGGAACTACCCTTTTCTTTTGTCACTTGATCCAGTCATTGGAGCTATAGCAGCTGGTAATGCTGTGGTTTTAAAACCATCAGAAATTGCCCCAGCCACATCATCACTGATGGCAAAACTGCTGGGAGACTACATGGATAACTCATGTATTAGAGTTGTTGAGGGAGCAGTTGATGAAACATCCGCATTGCTAGAGCAAAAGTGGGACAAAATTTTCTATACAGGTAATGGACGAGTGGCACGTGTTGTGATGGCTGCTGCTGCAAAACACCTTACACCAGTCGTGCTGGAGCTCGGAGGAAAATCTCCAGTTGTAGTCGATTCAAACATCAATTTAAAGGTAGCAACAAGACGAATAATTGCCGGAAAGTGGGGTTGTAATAATGGACAAGCCTGCATTTCTCCAGATTATGTTATAACAACAAAAGAATATGCTCCCAAGTTGGTGGATGCGCTGAAGACTGAATTGGAGAAATTTTATGGAAAGAACCCATTGGAATCAGAAGATTTGTCTCGTATTGTAAACTCCAATCACTTCAATCGCTTGAAAAAGCTCTTGGATGATGATAAGGTTTCTGGTAAGATTGTTCATGGAGGCAAAACGGATGAAAGCAAATTGAAGATTAGCCCTACTCTTCTCTTGGATGTCCCACGGGATTCTTTGATTATGAGTGAGGAGATATTCGGTCCTTTACTTCCCATCCTCACGGTTGACAAACTGGAAGAAAGCTTTGTTGTGATCAATTCAGGACCAAAGCCTCTCGCTGCATATATATTTACAAATAACAAGAAGCTCAAGGAACTATTTGTTAGGAATATTTCAGCTGGCGGCGTGGTTGTCAATGACACTACTTTACATCTTGCGGTTCATACTTTGCCATTTGGAGGAGTTGGTGAGAGTGGAGTGGGGGCATACCACGGGAAATTCTCATTTGATGCATTTAGCCACAAAAAGGCAGTTCTCTATCGCAGTTTTATTGGTGATGCATCAGTTAGGTACCCACCATACACAAGTACAAAGCAAAGATTGCTAAAAGCTCTCATTGGTGGTGGCATACTTGGTGTTATTCGTGCCCTGTTTGGTTGGTCCTAG 1482 0.4507 MSSQESDKTTSTESAFDAPAASRLVMELRGAFATGKTRSYDWRVTQLKALEKLVADHEPEIIDALRKDLAKPPLETVAYEIAMLKNSSKVALKELKHWIYPEKVKTSLATFPSSAEIVSEPLGVVLVISAWNYPFLLSLDPVIGAIAAGNAVVLKPSEIAPATSSLMAKLLGDYMDNSCIRVVEGAVDETSALLEQKWDKIFYTGNGRVARVVMAAAAKHLTPVVLELGGKSPVVVDSNINLKVATRRIIAGKWGCNNGQACISPDYVITTKEYAPKLVDALKTELEKFYGKNPLESEDLSRIVNSNHFNRLKKLLDDDKVSGKIVHGGKTDESKLKISPTLLLDVPRDSLIMSEEIFGPLLPILTVDKLEESFVVINSGPKPLAAYIFTNNKKLKELFVRNISAGGVVVNDTTLHLAVHTLPFGGVGESGVGAYHGKFSFDAFSHKKAVLYRSFIGDASVRYPPYTSTKQRLLKALIGGGILGVIRALFGWS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3060g00003 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 29 448 IPR016162 GO:0016491
Vium3060g00003 493 FunFam Aldehyde dehydrogenase 29 233 - -
Vium3060g00003 493 PIRSF ALDH 2 482 IPR012394 GO:0006081
Vium3060g00003 493 PANTHER ALDEHYDE DEHYDROGENASE 21 480 IPR012394 GO:0006081
Vium3060g00003 493 Pfam Aldehyde dehydrogenase family 18 450 IPR015590 GO:0016491
Vium3060g00003 493 FunFam Aldehyde dehydrogenase 230 430 - -
Vium3060g00003 493 SUPERFAMILY ALDH-like 25 461 IPR016161 GO:0016491
Vium3060g00003 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 230 430 IPR016163 GO:0016620
Vium3060g00003 493 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 226 233 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3060g00003 Vium-Chr3060 23283 29184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3060g00003 81 491 Aldehyde Dehydrogenase Gene Family AT1G44170 75.426 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3060g00003 K00128 - gmx:100778722 830.476