Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3060g00002 ATGGCGTCTAACACGAAGAAGAAAGTGTTTGGTTCAGAAGATGCTTTAGCGATGGTTGAGGAACTGAGAGCAGCGTTTGATTGTGGCAAGACACGTGGATGCGAATGGAGAATTTCCCAGTTGAAGGCCCTCATCAAGTTGAGTGAAGAACATGAGAAAGAGATTGTTCAAGCTCTTCACTCAGATCTGTCTAAGTCTGAAACTGAAGCCTTTGTGCAAGAGATTGCTATGTTGAAAAACTCAAGTAAAGTTGCGCTCAAAGAATTGAAACATTGGATATATCCCGAAAAGGTCAAAACTTCACTCGCAACTTTTCCTTCTTCAGCTGAAATAGTATCTGAGCCACTGGGGGTTGTGCTAGTCATCTCGGCATGGAACTACCCTTTTCTTTTGTCACTTGATCCAGTCATTGGAGCTATAGCAGCTGGTAATGCTGTGGTTTTAAAACCATCAGAAATTGCCCCAGCCACATCATCACTGATGGCAAAACTGCTGGGAGACTACATGGATAACTCATGTATTAGAGTTGTTGAGGGAGCAGTTGATGAAACATCCGCATTGCTAGAGCAAAAGTGGGACAAAATTTTCTATACAGGTAATGGACGAGTGGCACGTGTTGTGATGGCTGCTGCTGCAAAACACCTTACACCAGTCGTGCTGGAGCTCGGAGGAAAATCTCCAGTTGTAGTCGATTCAAACATCAATTTAAAGGTAGCAACAAGACGAATAATTGCCGGAAAGTGGGGTTGTAATAATGGACAAGCCTGCATTTCTCCAGATTATGTTATAACAACAAAAGAATATGCTCCCAAGTTGGTGGATGCGCTGAAGACTGAATTGGAGAAATTTTATGGAAAGAACCCATTGGAATCAGAAGATTTGTCTCGTATTGTAAACTCCAATCACTTCAATCGCTTGAAAAAGCTCTTGGATGATGATAAGGTTTCTGGTAAGATTGTTCATGGAGGCAAAACGGATGAAAGCAAATTGAAGATTAGCCCTACTCTTCTCTTGGATGTCCCACGGGATTCTTTGATTATGAGTGAGGAGATATTCGGTCCTTTACTTCCCATCCTCACGGTTGACAAACTGGAAGAAAGCTTTGTTGTGATCAATTCAGGACCAAAGCCTCTCGCTGCATATATATTTACAAATAACAAGAAGCTCAAGGAACTATTTGTTAGGAATATTTCAGCTGGCGGCGTGGTTGTCAATGACACTACTTTACATCTTGCGGTTCATACTTTGCCATTTGGAGGAGTTGGTGAGAGTGGAGTGGGGGCATACCACGGGAAATTCTCATTTGATGCATTTAGCCACAAAAAGGCAGTTCTCTATCGCAGTTTTATTGGTGATGCATCAGTTAGGTACCCACCATACACAAGTACAAAGCAAAGATTGCTAAAAGCTCTCATTGGTGGTGGCATACTTGGTGTTATTCGTGCCCTGTTTGGTTGGTCCTAG 1464 0.4249 MASNTKKKVFGSEDALAMVEELRAAFDCGKTRGCEWRISQLKALIKLSEEHEKEIVQALHSDLSKSETEAFVQEIAMLKNSSKVALKELKHWIYPEKVKTSLATFPSSAEIVSEPLGVVLVISAWNYPFLLSLDPVIGAIAAGNAVVLKPSEIAPATSSLMAKLLGDYMDNSCIRVVEGAVDETSALLEQKWDKIFYTGNGRVARVVMAAAAKHLTPVVLELGGKSPVVVDSNINLKVATRRIIAGKWGCNNGQACISPDYVITTKEYAPKLVDALKTELEKFYGKNPLESEDLSRIVNSNHFNRLKKLLDDDKVSGKIVHGGKTDESKLKISPTLLLDVPRDSLIMSEEIFGPLLPILTVDKLEESFVVINSGPKPLAAYIFTNNKKLKELFVRNISAGGVVVNDTTLHLAVHTLPFGGVGESGVGAYHGKFSFDAFSHKKAVLYRSFIGDASVRYPPYTSTKQRLLKALIGGGILGVIRALFGWS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3060g00002 487 SUPERFAMILY ALDH-like 16 455 IPR016161 GO:0016491
Vium3060g00002 487 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 224 424 IPR016163 GO:0016620
Vium3060g00002 487 FunFam Aldehyde dehydrogenase 224 424 - -
Vium3060g00002 487 PIRSF ALDH 2 476 IPR012394 GO:0006081
Vium3060g00002 487 PANTHER ALDEHYDE DEHYDROGENASE 16 474 IPR012394 GO:0006081
Vium3060g00002 487 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 23 442 IPR016162 GO:0016491
Vium3060g00002 487 FunFam Aldehyde dehydrogenase 23 227 - -
Vium3060g00002 487 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 220 227 IPR029510 GO:0016491
Vium3060g00002 487 Pfam Aldehyde dehydrogenase family 11 444 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3060g00002 Vium-Chr3060 23283 46470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3060g00002 71 485 Aldehyde Dehydrogenase Gene Family AT1G44170 74.641 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3060g00002 K00128 - gmx:100816594 781.556