Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3059g00001 ATGACTTGTAGAGTTGTCGTAATCTACTTCAGTTTCCTTTTTTTCCTTGCTACCTTCGTTCCACTTGTTCATATGCTTCCCTATGATAGAAACAAGCTTGACATCAATTTCTACGATAGATCATGCCCTAATTTGCTTATGATTGTTAGATATGGTGTTTGGTCAGCCTTGAAAGATGACAGCAGAATGGCCGCGTCCCTTCTTCGGTTACACTTTCACGATTGCATAGTAAATGGTTGTGATGCTTCGGTGCTTCTTGATGATACACCATATTTCACTGGTGAAAAGAATGCTCTTCCTAATCACAATTCACTTCGGGGGTTCGAAGTCATTGATGACATAAAACAACATGTTGAAAGACTGTGTCCATACACAGTCTCCTGCGCTGATATATTAGCATTAGCAGCCAGGGAAGCTATTGATATGGTTGGAGGACCTTCTTGGCCTGTTTCATTAGGCCGAAGAGATGCAACAACAACAAGTAAGGAGGCAGCTGAGCAACAACTTCCCTCTCCGATTGAGTCTCTAGAAAACATCACTGCAAAGTTTTACTCCAAGGGTCTTGACTTGAGGGATGTTGTAGCCCTTTCAGGAGGACATACAATTGGTTTTGCTCAATGCTTCACCTTCAAAGGGAGACTTTTTGACTATCAAGGCTCTGGTAGACCTGATCCCGTGCTTGACTCTTCGCTTCTCACAAGATTGCAAAGCATGTGCCCAAATGAAGAGACTTCGAACAGCAATCTAGCACCTCTTGATGCTACAAGCACCTCCACGTTCGACAATGAGTACTATAGAAATCTCATATACAACACAGGCCTTCTACAGTCTGATCAAGCACTAACTAGGGATCGAAGAACTGCTGCTATGGTTTACTATTACAGCAACAACCGTTTCTCCTTCTACAATGATTTTGCCCAATCCATGGTGAGGCTTAGTAATGCAGGCGTTCTTACAGGAAGAATGGGAGAAATTAGACAGAAATGTGGCTCTGTAAACTAA 1002 0.4261 MTCRVVVIYFSFLFFLATFVPLVHMLPYDRNKLDINFYDRSCPNLLMIVRYGVWSALKDDSRMAASLLRLHFHDCIVNGCDASVLLDDTPYFTGEKNALPNHNSLRGFEVIDDIKQHVERLCPYTVSCADILALAAREAIDMVGGPSWPVSLGRRDATTTSKEAAEQQLPSPIESLENITAKFYSKGLDLRDVVALSGGHTIGFAQCFTFKGRLFDYQGSGRPDPVLDSSLLTRLQSMCPNEETSNSNLAPLDATSTSTFDNEYYRNLIYNTGLLQSDQALTRDRRTAAMVYYYSNNRFSFYNDFAQSMVRLSNAGVLTGRMGEIRQKCGSVN 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3059g00001 333 PRINTS Haem peroxidase superfamily signature 253 268 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 PRINTS Haem peroxidase superfamily signature 192 207 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 ProSiteProfiles Plant heme peroxidase family profile. 32 333 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 Gene3D - 36 333 - -
Vium3059g00001 333 Gene3D Peroxidase, domain 2 170 312 - -
Vium3059g00001 333 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 PRINTS Plant peroxidase signature 307 320 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 PRINTS Plant peroxidase signature 267 284 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 PRINTS Plant peroxidase signature 191 203 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 PRINTS Plant peroxidase signature 251 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 CDD secretory_peroxidase 32 332 IPR033905 GO:0004601|GO:0042744
Vium3059g00001 333 PANTHER PEROXIDASE 72-RELATED 31 331 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 Pfam Peroxidase 53 297 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 SUPERFAMILY Heme-dependent peroxidases 33 333 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium3059g00001 333 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601
Vium3059g00001 333 FunFam Peroxidase 170 312 - -
Vium3059g00001 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 192 202 IPR019793 -
Vium3059g00001 333 FunFam Peroxidase 36 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3059g00001 Vium-Chr3059 5495 8230 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3059g00001 33 330 Peroxidase AT1G49570 63.333 2.08e-137 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3059g00001 K00430 - gmx:100812961 551.206