Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3055g00012 ATGACTGTATGCTCTGACACTCTTCATATCATTGCTGTAAAATACACTTGTTTTCTAGGTTCAATGGCGGGGTCATGTTTCCACGGACTTAGGCTAAGGATGTCTAAGAGTAAACCTTTACCAGAGCCTTCGTCTTCCTCCAAGTTAAGGTTGGAGAGTGAGACGGAGAACATGGAAAGGAAGAGATTTAATAGCACGGAATCGTGGTCCATGATATTGGACTCGATGGATACATGGGAGGCTTCAAAGGAGGACCAGGAGGGGGAGCAAGGGGAATGGACTGCAGACCTATCACAGCTTTTTATTGGTAACAGGTTTGCTTCTGGAGCTCACAGTCGAATTTACCGTGGAGTCTACAAGCAGAGAGCTGTTGCTGTGAAAATGGTGAAGATGCCATCCCAGGATGAGGAGAAAAAAGAATTACTAGAGGAGCAATTTAACTCTGAAGTGGCTTTGCTTTCACGTCTCTTCCATTTTAACATTGTGCAGTTCATTGCAGCATGTAAAAAACCGCCGGTGTACTGTATCATAACAGAATACATGTCACAAGGGAATCTAAGGATGTATCTGAACAAGAAAGAGCCATACTCACTCTCGATAGAAACAATACTAAGGATGGCTCTAGATATATCAAGGGGCATGGAGTACCTTCATTCACAAGGTGTTATTCACAGAGACTTGAAGTCAAGTAATTTGCTCCTCGACGATGATTTGAGGGTTAAGGTGGCGGATTTTGGCACATCTTGTCTTGAAACAAGATGCCGAAAAAGCAAAGGGAACTCGGGAACATATCGTTGGATGGCACCAGAGATGGTTAAGGAAAAACCTTATACTCGAAAAGTTGATGTCTACAGTTTTGGTATTGTGCTTTGGGAGCTCACTACTTCTCTACTTCCTTTCCAAGTAATGACCCCGGTGCAAGCTGCTTTTGCTGTGGCCGAGAAGAATGAAAGGCCTCCTCTGCCAGCAAGTTGTGAACCAGGACTAGCACATCTGATAAAGCGTTGTTGGTCAGCAAACCCGTCGAAACGGCCAGATTTCACTGACATTGTGTGTACGTTGGAGAAGTACGATGAGTGTATGAAGGAAGGCGTACCAATGAGCCATCATTCAGGGCTACTCAGCAGAAATGTAATTGTCGAACGCCTCAAAGGCTGTGTATCAATGACCTCCTCCATACCTGTCTATGCATGA 1194 0.4456 MTVCSDTLHIIAVKYTCFLGSMAGSCFHGLRLRMSKSKPLPEPSSSSKLRLESETENMERKRFNSTESWSMILDSMDTWEASKEDQEGEQGEWTADLSQLFIGNRFASGAHSRIYRGVYKQRAVAVKMVKMPSQDEEKKELLEEQFNSEVALLSRLFHFNIVQFIAACKKPPVYCIITEYMSQGNLRMYLNKKEPYSLSIETILRMALDISRGMEYLHSQGVIHRDLKSSNLLLDDDLRVKVADFGTSCLETRCRKSKGNSGTYRWMAPEMVKEKPYTRKVDVYSFGIVLWELTTSLLPFQVMTPVQAAFAVAEKNERPPLPASCEPGLAHLIKRCWSANPSKRPDFTDIVCTLEKYDECMKEGVPMSHHSGLLSRNVIVERLKGCVSMTSSIPVYA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3055g00012 397 SMART serkin_6 100 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3055g00012 397 Gene3D Transferase(Phosphotransferase) domain 1 183 376 - -
Vium3055g00012 397 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 93 357 - -
Vium3055g00012 397 ProSiteProfiles Protein kinase domain profile. 100 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3055g00012 397 PRINTS Tyrosine kinase catalytic domain signature 178 191 IPR001245 GO:0004672|GO:0006468
Vium3055g00012 397 PRINTS Tyrosine kinase catalytic domain signature 216 234 IPR001245 GO:0004672|GO:0006468
Vium3055g00012 397 PRINTS Tyrosine kinase catalytic domain signature 262 272 IPR001245 GO:0004672|GO:0006468
Vium3055g00012 397 PRINTS Tyrosine kinase catalytic domain signature 325 347 IPR001245 GO:0004672|GO:0006468
Vium3055g00012 397 PRINTS Tyrosine kinase catalytic domain signature 281 303 IPR001245 GO:0004672|GO:0006468
Vium3055g00012 397 CDD STKc_MAP3K-like 107 351 - -
Vium3055g00012 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Vium3055g00012 397 FunFam Serine/threonine-protein kinase isoform 1 90 182 - -
Vium3055g00012 397 MobiDBLite consensus disorder prediction 36 57 - -
Vium3055g00012 397 SUPERFAMILY Protein kinase-like (PK-like) 81 354 IPR011009 -
Vium3055g00012 397 Pfam Protein tyrosine and serine/threonine kinase 103 353 IPR001245 GO:0004672|GO:0006468
Vium3055g00012 397 FunFam serine/threonine-protein kinase HT1 183 375 - -
Vium3055g00012 397 Gene3D Phosphorylase Kinase; domain 1 89 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3055g00012 Vium-Chr3055 141535 146409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3055g00012 22 388 MAP Kinase Kinase Kinase AT1G62400 75.989 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium3055g00012 PK_Tyr_Ser-Thr 1.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3055g00012 - - gmx:100810171 647.891