Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3055g00003 ATGAGTCAACTCGGCGTGGTGTTGCAGGAATCGCTACAGAGGGAGCCCAGAACCATTCTGGGGTTGTTGAGTGATCAGATGGACGGTGTAGAGAGTGGGGCTCGCAGGAGGAAGAGCTTCAAGGAACGCTTCGGATTCATGGGCATCGGCTGCTGTGGGGCCTCATGGGGGTTCCGTTCCGACGCGTTAAGTTTCACCCAAGGAGAACAACAGCAGCAAGCCAACCACCAGGAAACGGATCCGGGACAAGGGTCGGGTTTGGACTGTGTGGACCAGGGTGCAGCGGGTTCAGGTATGAACTTGGCGGCGGCGCTTGCGGCTGAGCGGCAAATCCGGGGGCCGCAGGAGGAGGCGGGGAGAGCTCCGGGGACGCCGTGGAGGGTGTCGCTGATGAGGCTGCTGGAGGAGAGCGAAGGAGGGGAGTCCGCGGCGGTGGAGAAGGAAAAGGAGGAGGAGAAGGGTGATGTTGTGGGGAATGATTCGATGTGCTGCGTGTGCATGGGAAGGAAGAAAGGCGCGGCCTTCATCCCATGTGGTCACACTTTTTGCAGAGTGTGTTCCAGGGAACTGTGGCTGAATCGAGGGTCCTGTCCCCTCTGCAATCGCTCCATCCTCGAGATCCTCGACATTTTCTAG 636 0.5943 MSQLGVVLQESLQREPRTILGLLSDQMDGVESGARRRKSFKERFGFMGIGCCGASWGFRSDALSFTQGEQQQQANHQETDPGQGSGLDCVDQGAAGSGMNLAAALAAERQIRGPQEEAGRAPGTPWRVSLMRLLEESEGGESAAVEKEKEEEKGDVVGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3055g00003 211 MobiDBLite consensus disorder prediction 67 82 - -
Vium3055g00003 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 211 IPR013083 -
Vium3055g00003 211 PANTHER OS01G0917900 PROTEIN 7 211 - -
Vium3055g00003 211 Pfam Zinc finger, C3HC4 type (RING finger) 160 205 - -
Vium3055g00003 211 ProSiteProfiles Zinc finger RING-type profile. 163 201 IPR001841 -
Vium3055g00003 211 MobiDBLite consensus disorder prediction 67 87 - -
Vium3055g00003 211 SMART ring_2 163 200 IPR001841 -
Vium3055g00003 211 CDD RING-HC 163 200 - -
Vium3055g00003 211 SUPERFAMILY RING/U-box 156 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3055g00003 Vium-Chr3055 30175 31279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3055g00003 19 211 C3H Transcription Factor Family AT4G22250 54.545 5.95e-61 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3055g00003 - - pvu:PHAVU_006G145000g 302.367