Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3050g00001 ATGGAGCTTCAGATACGTGTTTTTTGTCTCTTCTTGTTTCTCCTGACTCTGCTCTCGGGGTCTCAGGCCTACACCTTCTACGTTGGTGCGAAAGATGGGTGGGTTTTGTACCCTTCTGAGAATTACAATCACTGGGCTGAAAGGATGAGGTTTCAAGTCAGTGACACTCTTGTTTTCAAGTACAAGAAGGGATCGGACTCGGTTTTGGTGGTGAACAAGGAGGATTACGAGAAATGTAACAAGAAGAACCCGATCAAGAAGTTTGAGGATGGTGCCTCTGAGTTTCAGTTTGATCGGTCTGGTCCCTTTTATTTCATCAGTGGAAAAGATGATTATTGTGAGAAGGGTCAGAAACTTATCATTGTTGTTTTGGCTGTGAGGGAGCCTCCTCCATCTTCTCCAACGCCACCAAATCTTCCACCTCCTCCAAAAACTCCTTATCCACCCCATGTTCCTCCAAAAGCACCTTCCCCTGCCCACCAACCTTTTGTCCCAATTCCTCCAACCATTCCCTCTCCTATTTCTCAACCCCCCTACACTCCTTCCCCTTCCCATCAACCTCCCTTTCTTCCAATAGCACCATCGCCATTTTCTCAATCACCTCATGTGCCACCACCACCCAAAACTCCATCTCCTACTTCCCAACCACCTTACATTTCCACACCGCCATCCACCGCCCCTTCTCCCATTTCCCAACCTCCCTACATTCCAAAACCTCCAAACACTCCTTCCCCAACATCTCAACCACCCTACCCTAATGCCCCAACTCCATATCCCAATTCCCCCATCACTCCACCCCCATCATCAGCATCATCTCCAACTTCCTCGCCACCCTATCCATCCACCGTCCCTCCATCGTACCCACCTTCCCCCTTCGCTCCGGCTACTACACCCTCCACTGCGTCACCACCATTGCCGTCTCCGGCAACCGCCACTTCTCCTCCGGCACCACTACCGGCAGCAACAAGCCCATCGCCATCGTCTTCGTCGGGATCGTCCTCGAACGAAACGACGCCGTCCCGGCCAAACGGCGCGTCGTCTGTATCTGAATCGCGTTTTGGAGTGTACTCACTAACCATTCTGGTCGGTGCTGCTCTCAGTACCATTCTTGGTTAG 1116 0.5143 MELQIRVFCLFLFLLTLLSGSQAYTFYVGAKDGWVLYPSENYNHWAERMRFQVSDTLVFKYKKGSDSVLVVNKEDYEKCNKKNPIKKFEDGASEFQFDRSGPFYFISGKDDYCEKGQKLIIVVLAVREPPPSSPTPPNLPPPPKTPYPPHVPPKAPSPAHQPFVPIPPTIPSPISQPPYTPSPSHQPPFLPIAPSPFSQSPHVPPPPKTPSPTSQPPYISTPPSTAPSPISQPPYIPKPPNTPSPTSQPPYPNAPTPYPNSPITPPPSSASSPTSSPPYPSTVPPSYPPSPFAPATTPSTASPPLPSPATATSPPAPLPAATSPSPSSSSGSSSNETTPSRPNGASSVSESRFGVYSLTILVGAALSTILG 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3050g00001 371 MobiDBLite consensus disorder prediction 323 353 - -
Vium3050g00001 371 Gene3D - 22 127 IPR008972 -
Vium3050g00001 371 ProSiteProfiles Phytocyanin domain profile. 24 125 IPR003245 GO:0009055
Vium3050g00001 371 MobiDBLite consensus disorder prediction 129 322 - -
Vium3050g00001 371 SUPERFAMILY Cupredoxins 23 124 IPR008972 -
Vium3050g00001 371 FunFam Early nodulin-like protein 1 23 128 - -
Vium3050g00001 371 PRINTS Proline rich extensin signature 192 217 - -
Vium3050g00001 371 PRINTS Proline rich extensin signature 170 187 - -
Vium3050g00001 371 PRINTS Proline rich extensin signature 125 146 - -
Vium3050g00001 371 PRINTS Proline rich extensin signature 152 168 - -
Vium3050g00001 371 PANTHER BLUE COPPER PROTEIN 24 210 IPR039391 GO:0009055
Vium3050g00001 371 CDD OsENODL1_like 24 124 IPR041846 -
Vium3050g00001 371 MobiDBLite consensus disorder prediction 129 353 - -
Vium3050g00001 371 Pfam Plastocyanin-like domain 34 117 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3050g00001 Vium-Chr3050 6969 8508 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3050g00001 1 185 Phytocyanin Superfamily AT5G53870 48.744 2.57e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3050g00001 - - var:108333029 294.664