Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3049g00023 ATGTCTCAGAAACAGAACTGCACTCTCGTACCCACAACAACAGCCATGGAAGAACCCACATTATTGTTCCCAGACACAGACCTGGATCTCAGTTTTACCAGCACCACCACCGACCGCACCAGCGCCCGAACAAGCCTCGCCCGATCCAGCAGCCTCACACTCAGCTTCAACGATCGTATCTCCACTGCCGAGCCCTCCATCTCAGTCGTAAACCGTCACCCCCACCGGAGCTCCGACCCCAACTGGTCCGCCATCCAAGCCGCCACCATGCTCTCCTCCGACGGCCGCCTCCACCTCCGCCATCTTAAGCTGCTCCGCCACCTCGGCTCCGGCAACCTCGGCCGCGTCTTCCTCTGCCGCCTGCGCGACTACGATGGCGCCAACTTCGCCCTCAAAGTCGTCGACAAAGACCTCCTCACCCCCAAAAAACTCTCCCACGCGGAAACCGAGGCCGAAATCCTCCACTCGCTCGACCATCCCTTCCTCCCCACGCTCTACGCGCGCATCGACGTCTCGCACTACACGTGCCTCCTCATCGACTACTGCCCCGCCGGCGATCTCCACTCCCTCCTCCGCAAACAGCCACAGCACCGCCTCACCCTCTCGGTAGCGCGTTTCTTCGCCGCTGAGGTCCTCGTCGCCCTTGAGTACCTCCACGCTCTCGGAATCGTCTACCGCGACCTTAAACCCGAGAACGTTCTCTTGCGCGAAGACGGCCACGTCATGCTCTCGGATTTCGATCTCTGCTTCAAATCTGACGTGGCACCCAGCCTCACATTTCAGACCCACAACAAACCCTCTCGAGTGGGCCCCACCGACGGTTGCTTCAGTTGTAACTGTCTTCCCTACAGACAACACCACCAGACTTTCCTTGCAGAGTTCATTGCGGAACCCGTGGCGGCGTTTTCACGGTCTTGCGTCGGGACGCACGAGTACCTCGCGCCTGAGCTTGTCTCGGGTAACGGTCACGGTAACGGCGTTGACTGGTGGGCTTTTGGGGTTTTCCTCTACGAGTTGCTGTACGGGACAACGCCGTTTAAGGGCTGCAACAAAGAGAACACACTGCGCAACATAGCGTCGTGTAAGGACGTGAGATTCGTCCACGTGTCGGAAGGAGAAGAGCCTGGGATGACTGAGGCTAGGGATTTGATTGAGAAGCTGCTGGTGAAGGATCCAAGGAGGAGGCTAGGGTGCGCCAAGGGTGCCACTGATGTTAAACGACACCCATTTTTCGACGGCATTAAGTGGCCCTTGATTAGAACTTACCGGCCACCGGAAGTGAAGGGCTTGGTGAGAAGGAACAGGTCGCACGTGAGTGATCACGTGAGTTACAGGAGGAAGAGGTGGTCGTGGAAGAGACTTTCCCATGTCCTTCGGAAATGTAATTTGATTTCAAACTATAGTAATAATAATAACAATTGTTATCACTATGTTGATAGTTATAAGGTTAATTAG 1455 0.5622 MSQKQNCTLVPTTTAMEEPTLLFPDTDLDLSFTSTTTDRTSARTSLARSSSLTLSFNDRISTAEPSISVVNRHPHRSSDPNWSAIQAATMLSSDGRLHLRHLKLLRHLGSGNLGRVFLCRLRDYDGANFALKVVDKDLLTPKKLSHAETEAEILHSLDHPFLPTLYARIDVSHYTCLLIDYCPAGDLHSLLRKQPQHRLTLSVARFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVAPSLTFQTHNKPSRVGPTDGCFSCNCLPYRQHHQTFLAEFIAEPVAAFSRSCVGTHEYLAPELVSGNGHGNGVDWWAFGVFLYELLYGTTPFKGCNKENTLRNIASCKDVRFVHVSEGEEPGMTEARDLIEKLLVKDPRRRLGCAKGATDVKRHPFFDGIKWPLIRTYRPPEVKGLVRRNRSHVSDHVSYRRKRWSWKRLSHVLRKCNLISNYSNNNNNCYHYVDSYKVN 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3049g00023 484 Gene3D Transferase(Phosphotransferase) domain 1 186 253 - -
Vium3049g00023 484 FunFam Serine/threonine-protein kinase WAG2 101 185 - -
Vium3049g00023 484 Gene3D Transferase(Phosphotransferase) domain 1 304 426 - -
Vium3049g00023 484 SMART serkin_6 102 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3049g00023 484 ProSiteProfiles Protein kinase domain profile. 102 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3049g00023 484 CDD STKc_phototropin_like 109 427 - -
Vium3049g00023 484 FunFam Serine/threonine-protein kinase OXI1 186 253 - -
Vium3049g00023 484 FunFam Serine/threonine-protein kinase OXI1 301 429 - -
Vium3049g00023 484 SUPERFAMILY Protein kinase-like (PK-like) 78 436 IPR011009 -
Vium3049g00023 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Vium3049g00023 484 PANTHER FLIPPASE KINASE 1-RELATED 44 429 - -
Vium3049g00023 484 Pfam Protein kinase domain 104 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3049g00023 484 Gene3D Phosphorylase Kinase; domain 1 101 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3049g00023 Vium-Chr3049 160139 162536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3049g00023 16 478 AGC Kinase Gene Family AT3G14370 65.272 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium3049g00023 Pkinase 6.5e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3049g00023 - - gmx:100778383 691.419