Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3049g00021 ATGATGGCAGTGGACTATAGTTTTCACTTCCTCAATGGGGTTTATGTGATGATGTTGTTTTGCGTTGGCATTGTACTTGTGAATTCGGTTAATCAAGAGGGGTCAAGTCTCTTGATGTTCAAAGCTTCCCTTCATGACCCAAACAACAATCTCTACAACTGGAACTCGTCTGATTTGACTCCTTGCAATTGGACTGGTGTATATTGCACGGGTTCAGTGGTAACTTGTGTAAAACTTTACCAGCTTAATCTATCTGGTACTTTGGCTCCCACCATCTGCAATCTTCCAAAGCTGCTCGAGTTGAATTTGTCAAAAAATTTCATCTCTGGCCCCATTCCTGATGGTTTTGTTGACTGTGGTAGTTTGGAGGTTTTGGACCTTTGCACAAATAGGCTTCACGGACCCCTTCTGGCCCCTCTTTGGAAAATCACAACACTTAAAAAGCTCTATCTGTGTGAAAACTATATGTATGATGAAGTGCTGGAGGAGCTTGGGAATTTGGTGTCACTTGAGGAGCTAGTCATCTATAGCAATAATTTAACTGGGAGAATTCCCTCTTCAATAAGAAAGTTGAAGCAGCTTAGAGTTATAAGGGCCGGTCTGAATGCCCTCTCAGGACCAATACCTACTGAAATCAGTGAATGTGAGAGCTTGGAGATATTGGGGTTGGCACAGAATCAGCTAGATGGTTCTATTCCAAGGGAGCTTCAAAAGCTTCAGAACCTCACTACTATACTTCTGTGGCAAAATTCTTTCTCTGGAGAGATTCCTCCTGAGATTGGAAACATTAGTAGCTTGGAATTGCTTGCTTTGCACCAAAATTTACTAACTGGTGGTGTCCCCAGGGAACTGGGAAAGCTGTCCCAGTTGAAGAGGTTGTACATGTACACCAACATGCTGAACGGAACAATTCCACCTGAGCTAGGAAACTGCACAAATGCTATTGAGATAGACCTATCTGAAAATCATTTGATTGGGATCATTCCCAAGGAGCTGGGCCTAATCTCTAATCTTAGCTTGCTTCATCTGTTTGAAAACAACCTGCAGGGTCATATTCCAAGGGAGCTCGGTCAGTTAAGGGTGCTAAGAAATTTAGACCTGTCACTAAATAACTTGACTGGTACAATTCCACTTGAATTTGAAAACCTTACACATATGGAAGATTTGCAGCTATTTGACAATCAACTTGAAGGTGTGATTCCTCCTCGGCTTGGAGCTATTAGGAACCTTACTATTCTTGATATATCTGCAAACAACCTTTTTGGTATGATACCTCTTCATCTTTGTGGATATCAGAAGCTACAATTCCTGAGCCTTGGGTCAAATAGGTTATTTGGAAATATTCCTTATAGCCTCAAAACGTGCAAATCTCTTGTGCAGCTTATGCTGGGGGACAACCAGCTGACAGGAAGCCTGCCTGTTGAACTGTATGAACTTCACAATCTCACTGCACTTGAACTCTATCAGAATCGATTTTCTGGGATGATAAACACCGGGATAGGTCAACTCAGGAATCTAGAGAGGCTTCTCTTGTCAGCTAACTACTTTGAAGGCTATCTACCGCCTGAGATTGGAAGTTTGAAACAACTTGTCACATTCAATGTTTCCTCTAACCGTTTCAGTGGAAGCATTCCTCAAGATTTGGGAAACTGTGTTAGACTGCAGAGGCTTGATCTTAGCAGGAACCACTTCACTGGTATGCTTCCAAATGAAATTGGAAGCCTGGTGAACTTGGAGCTCTTAAAAGTTTCTGATAACGTCCTCTCAGGAGAAATACCAGGCTCTTTGGGGAATCTTATTCGGCTCACAGACCTGGAACTAGGTGGCAACCAATTTTCAGGAAGCATTTCTATTCATTTGGGAAGACTTGCGGCCCTTCAGATTGCTCTTAACCTGAGCCACAACAAACTTTCTGGGTCAATTCCTGATAGTCTTGGGAACTTACAAATGCTAGAGTCACTTTATCTCAATGACAATCAACTTATTGGTGAGATTCCAACATCAATTGGTGACCTTCTCAGTCTTGTAGTGTGCAATGTATCTAACAACAAGCTAGTAGGAACTGTTCCAGACACCACTACATTTAGAAAGATGGATTTCACGAACTTCGCTGGGAACAACGGTTTGTGCCGTGTCGGTACCAGTCATTGCCATCCATCAATAGCTTCCTCTCATGCTGCAAAACAAAGCTGGATCAGAAATGGTTCCTCGAGGGAAAAAATAGTGAGCATTATTTCCGGGGTTGTAGGACTAGTTTCTCTTATTTTCATAGTGTGGATATGTTTGGCTATGAGGCACCGTGGCCATGATGCTTTTGTCTCACTTGAAGGGCAAACTAACACTCATGTCTTGGATAACTACTACTTTCCTAAAGAAGGGTTTACATACCAGGATCTCTTGGAAGCCACTGGCAACTTTTCAGAAAATGCAGTTCTAGGAAGAGGAGCTTGTGGCACTGTGTACAAGGCTATTATGAGTGATGGTGAAGTGATTGCTGTTAAAAAGCTGAATTCGCGAGGAGAAGGAGCAAATAATGTTGACCGAAGCTTCCTTGCCGAGATTTCAACTCTTGGTAAGATCAGGCACAGGAACATTGTGAAGCTGTATGGATTTTGCTACCATGAGGATTCTAATCTTCTCCTATATGAATACATGGAAAATGGAAGCCTTGGTGAACAACTTCATTCAAGTGCAATCACTTGTGCACTGGATTGGAGTAGTCGATATAAAATTGCTCTTGGAGCAGCAGAAGGCTTATGCTATCTTCATTATGACTGCAAACCTCAAATTATTCACCGTGACATAAAGTCTAACAACATATTACTTGATGAGGTGTTTCAGGCTCACGTTGGAGACTTTGGCTTGGCAAAGTTGATTGATTTTTCTTTCTCAAAATCCATGTCTGCTGTGGCTGGTTCCTATGGCTACATTGCCCCAGAATACGCTTACACGATGAAGGTGACTGAGAAGTGTGACATCTATAGCTTTGGGGTAGTTTTGCTTGAACTAGTTACTGGGAGGTCACCTGTTCAACCTTTGGAACAAGGTGGTGACCTAGTCACCTGTGTGAGAAGAGCAATTCAAGCATCAGTACCAACATCTGAATTATTTGACAAGAGATTGAATCTTAGTGCTCCAAAGACAGTTGAAGAAATGTCTCTTGTTCTCAAAATTGCCCTGTTTTGTACCAGCACGTCTCCACTTAATAGGCCTACTATGAGAGAGGTCATTGCAATGTTGATTGATGCCAGGGAATATGTCAGCAACTCACCAACCTCTCCTACATCAGAGTCTCCATTGGATGAGGATGATGCCATTTCTTCCAAAGATGATGGTGCTAAGTCGTAA 3348 0.4232 MMAVDYSFHFLNGVYVMMLFCVGIVLVNSVNQEGSSLLMFKASLHDPNNNLYNWNSSDLTPCNWTGVYCTGSVVTCVKLYQLNLSGTLAPTICNLPKLLELNLSKNFISGPIPDGFVDCGSLEVLDLCTNRLHGPLLAPLWKITTLKKLYLCENYMYDEVLEELGNLVSLEELVIYSNNLTGRIPSSIRKLKQLRVIRAGLNALSGPIPTEISECESLEILGLAQNQLDGSIPRELQKLQNLTTILLWQNSFSGEIPPEIGNISSLELLALHQNLLTGGVPRELGKLSQLKRLYMYTNMLNGTIPPELGNCTNAIEIDLSENHLIGIIPKELGLISNLSLLHLFENNLQGHIPRELGQLRVLRNLDLSLNNLTGTIPLEFENLTHMEDLQLFDNQLEGVIPPRLGAIRNLTILDISANNLFGMIPLHLCGYQKLQFLSLGSNRLFGNIPYSLKTCKSLVQLMLGDNQLTGSLPVELYELHNLTALELYQNRFSGMINTGIGQLRNLERLLLSANYFEGYLPPEIGSLKQLVTFNVSSNRFSGSIPQDLGNCVRLQRLDLSRNHFTGMLPNEIGSLVNLELLKVSDNVLSGEIPGSLGNLIRLTDLELGGNQFSGSISIHLGRLAALQIALNLSHNKLSGSIPDSLGNLQMLESLYLNDNQLIGEIPTSIGDLLSLVVCNVSNNKLVGTVPDTTTFRKMDFTNFAGNNGLCRVGTSHCHPSIASSHAAKQSWIRNGSSREKIVSIISGVVGLVSLIFIVWICLAMRHRGHDAFVSLEGQTNTHVLDNYYFPKEGFTYQDLLEATGNFSENAVLGRGACGTVYKAIMSDGEVIAVKKLNSRGEGANNVDRSFLAEISTLGKIRHRNIVKLYGFCYHEDSNLLLYEYMENGSLGEQLHSSAITCALDWSSRYKIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDEVFQAHVGDFGLAKLIDFSFSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVTCVRRAIQASVPTSELFDKRLNLSAPKTVEEMSLVLKIALFCTSTSPLNRPTMREVIAMLIDAREYVSNSPTSPTSESPLDEDDAISSKDDGAKS 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3049g00021 1115 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 772 884 - -
Vium3049g00021 1115 Gene3D Ribonuclease Inhibitor 141 233 IPR032675 -
Vium3049g00021 1115 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Vium3049g00021 1115 Gene3D Ribonuclease Inhibitor 32 140 IPR032675 -
Vium3049g00021 1115 FunFam Nuclear pore complex protein NUP107 30 182 - -
Vium3049g00021 1115 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 331 1081 - -
Vium3049g00021 1115 MobiDBLite consensus disorder prediction 1088 1115 - -
Vium3049g00021 1115 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Vium3049g00021 1115 SUPERFAMILY Protein kinase-like (PK-like) 781 1080 IPR011009 -
Vium3049g00021 1115 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 183 280 - -
Vium3049g00021 1115 Gene3D Phosphorylase Kinase; domain 1 772 884 - -
Vium3049g00021 1115 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 281 383 - -
Vium3049g00021 1115 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 885 1097 - -
Vium3049g00021 1115 Gene3D Ribonuclease Inhibitor 234 390 IPR032675 -
Vium3049g00021 1115 SUPERFAMILY RNI-like 365 687 - -
Vium3049g00021 1115 SUPERFAMILY L domain-like 32 310 - -
Vium3049g00021 1115 Pfam Leucine Rich Repeat 553 575 IPR001611 GO:0005515
Vium3049g00021 1115 Pfam Protein kinase domain 807 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3049g00021 1115 ProSiteProfiles Protein kinase domain profile. 806 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3049g00021 1115 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 407 721 - -
Vium3049g00021 1115 SMART serkin_6 806 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3049g00021 1115 Gene3D Transferase(Phosphotransferase) domain 1 885 1098 - -
Vium3049g00021 1115 SMART LRR_typ_2 551 574 IPR003591 -
Vium3049g00021 1115 SMART LRR_typ_2 287 311 IPR003591 -
Vium3049g00021 1115 SMART LRR_typ_2 383 407 IPR003591 -
Vium3049g00021 1115 SMART LRR_typ_2 575 599 IPR003591 -
Vium3049g00021 1115 SMART LRR_typ_2 359 382 IPR003591 -
Vium3049g00021 1115 SMART LRR_typ_2 167 191 IPR003591 -
Vium3049g00021 1115 SMART LRR_typ_2 95 119 IPR003591 -
Vium3049g00021 1115 SMART LRR_typ_2 648 672 IPR003591 -
Vium3049g00021 1115 SMART LRR_typ_2 503 527 IPR003591 -
Vium3049g00021 1115 Gene3D Ribonuclease Inhibitor 391 724 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3049g00021 Vium-Chr3049 138633 144440 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3049g00021 52 1084 Receptor kinase-like Gene Family AT1G73080 37.477 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium3049g00021 Pkinase 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3049g00021 - - gmx:100818311 2012.27