Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3049g00020 ATGGAGGATACTAATCAATGGCGTCGCTATGACCATGACCCACTTCTTCTCACCGACGTTTCTTTGCAACAAGAATCCTCTTCTTATACTCGCTGTTCCAATTCTCTTTCGCAAACATCACTGAGCTCTCGGAGTTTGGCTATGGAGGATGTGCCCGTGTGTGGTGACAGTGCCAGTATCGGATTTTCTCGGGAAAATGGAGGTTTGGAAGGGAACAGCATGAAGTTCGATGACCCAATTGTGAAAGATGTGTTTGATGGAAGATCTATTTTGGGGTATTCTCTAGCATCCCCAGATTTGGTTATTTGTGGTGGCTCACCGGATATTGCTGGAATTAGCTGTTGTGATTCCCCTGAGTTTTTGAAGAACCAATATTACAAGAATGTGGAGTCATCTGTGGAGCTTTCTCTAGAGTATGGAATCAAGGGGTCTCAAGTTGAAGTTGACAATGGCCCTAAGATGCCAACTGTTAAATTCTCCAACCTCTGTCAAACTTTTGAGCAAGAGGAAGAGCTTCTGAGCCCTGAAGCCTCCTTTGAACTTCTTCCACCCCTTCTAACCAAGGATGAGGCACCCCATGATTCCCCTCCAAGAGATGCTGAGATGACAGAAGATAATGGAGTGTCTGAGGAGGCAGAATTGGGGTTCTCAGAAGATGCTGATGATATTGGGGTAGAAGAGAAACTTAAAAGGCTGAAAAGAGACTTTGAGTGTCAGAGAAAGGAGCTGGCAGAAACAAGGAGGGAGTTAGGAGAGGTCAAGAAGGAGAATCAACAGAAGAGTAAAGAGTGTCAAGAAGCTTGGAACTCCTTGAAAGAGCTTCAGAATGAGCTAATGCGCAAGTCCATGCACGTAGGATCTTTGGCATTTGCCATTGAGGGACAAGTGAAAGAGAAAAGTAGGTGGTTTTCGTCACTGAGAGATTTAACAAGGAAATTGAAGATTTTGAAAATGGAACACATGAAGCTATTAGAAGAAGCTGAGGAAAGCAAAAACTATCAAGCAGATATGAAAGAAATGGGGCATATTATCAGGTCCAAAATAAATGAGCAACTGGAGTCCCTTGAAGATCTCAAGTCCAAATATGCCGAAGGGGTTAAGGAACGGAAAGAGCTTTACAACAAGGTTTTGGAGTTGAGAGGAAACATAAGGGTCTTTTGCCGTTGTAGGCCTCTCAATGCTGAAGAGATAGCCGCAGGAGCAACCATGGCCTTAGATTTTGAATCTGCGAAAGATGGTGAGCTAACTGTAATGTCAAATGGAGCTCCTAAAAAGACTTTCAAGTTCGATGCTGTCTTTGATCCCCAAGCTGAACAAGCTGATATTTTTGAAGACACAGCACCGTTTGCGACATCAGTTTTAGATGGATTCAACGTATGCATTTTTGCATATGGACAGACTGGAACAGGAAAAACTTTCACAATGGAGGGCAGTGAAGAGGCTCGAGGTGTAAACTTTAGGACTCTCGAAAAAATGTTCGACATAATCAAGGAGAGACAGAAGTTTTATTGTTATGATATTTCAGTAAGTGTCTTAGAAGTGTACAATGAGCAAATAAGAGATTTGCTGGTTGCAGGAAATCATCAAGGATCAGCTGCAAAAAGACTTGAAATAAGGCAAGCTAGTGAAGGAATACATCACATTCCAGGGTTGGTTGAGGCACGTGTGAATAATATGACTGAAGTCTGGGAAGTCCTACAAACTGGAAGCAATGCAAGGGCAATAAGCTCAACCAATTCCAATGAGCATAGCAGTCGATCACACTGCATTCACTGTGTTATGGTTAAGGGAGAGAATTTGTTGAATGGGGAATGCACGAGAAGCAAGCTATGGTTGGTGGATCTAGCGGGCAGTGAACGAGTGGCAAAGACAGAAGTTCATGGTGATAGATTGAAGGAGACACAGAATATTAACAGGTCTCTGTCTGCACTTGGTGATGTCATATCAGCTCTTGCAACGAAAAGTTCACACATCCCATTCAGGAACTCTAAGCTTACACACTTGTTGCAAGACTCATTAGGAGGAGATTCAAAAGCACTCATGTTTGTACAGATCAGTCCTAATGAAAACGATTTAAGTGAGACAATTTGCTCTCTTAATTTTGCTAGTAGAGTAAGAGGAATAGAATTGGGCCCTGCAAGAAAGCATTTGGACACTGTTGAGCTTTTGAGACACAAACAAATTGCTGATAAAGTTAAACAAGAGATAAAGATGAAGGATATGCAAATCAAGAAGATGGAGGAAACAATCCATGGATTAGAGTCCAAGATGAAGGAAAGAGATATCAGAAACAAAAATCTGCAAGAGAAGGTCAAGGAACTGGAATCACAGCTTCTGATTGAAAGAAAGTTGGCACGTCAACATGTAGACTCAAAGATAGCTGAGCAGCACCAAATGAAACATCAAGAAGAGCAAAATAATGCACTTATGAGATCAGCACTCGCAAGTCGACCTCTAGGAAGTCTCAAGAATTTCAATGATTCAGTGAGTGGTGGATGGTGCAAAGACCAACAAATTAATTCTGCTAAACCACTCACAGAAAGCAACCTCATTAAACCTTTTATGCCCTTTGCTACGATGGAGAGCTCCATCAAGTGCATTGACCATGCTGAGAAAGAAAACAATCCTGACATGGCTGAAAAAGCCCTACTGCCAAAGAGGCCTGGAAGAGCTTCTTCCATCTGCATGATGGCACCACGTGTTCCTTCAGCTATTGCTTCAAGGAGAAACTCTCTGATTCCACTCCCAAGTATTCCTAGCTTAACACAGTTCCAATCACCACTGTTACCAAATTTAACAAACCAAGTTGACCAGAAAGATGTCATTGGGGAAGTAGAAACAAACTGTGTTCCTGCACAGACTCATTGTGAGAGTCCCAAAGAAGTTAGAATTGGCGCTAAGAGGATAGGTAGCATACTAAGAAGAAGCCTTCATAAGAAAATCCAAGTGAAGTCTCCACTTCATCAGCACATGAGGAAGGTTGGTGTAAATGTTGGGATGGAGAAAGTTAGAGTTTCCATTGGAAGTAGGGGTAGATTGGCACCAAGGGGGCAAGTAGGTTGTAGAAAAGGAGGAACTAGAGATATTCAACAAAAGAACAGTCAAAAGGAAAAGGAAAGGGGGTGGATCTGA 3132 0.4234 MEDTNQWRRYDHDPLLLTDVSLQQESSSYTRCSNSLSQTSLSSRSLAMEDVPVCGDSASIGFSRENGGLEGNSMKFDDPIVKDVFDGRSILGYSLASPDLVICGGSPDIAGISCCDSPEFLKNQYYKNVESSVELSLEYGIKGSQVEVDNGPKMPTVKFSNLCQTFEQEEELLSPEASFELLPPLLTKDEAPHDSPPRDAEMTEDNGVSEEAELGFSEDADDIGVEEKLKRLKRDFECQRKELAETRRELGEVKKENQQKSKECQEAWNSLKELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRKLKILKMEHMKLLEEAEESKNYQADMKEMGHIIRSKINEQLESLEDLKSKYAEGVKERKELYNKVLELRGNIRVFCRCRPLNAEEIAAGATMALDFESAKDGELTVMSNGAPKKTFKFDAVFDPQAEQADIFEDTAPFATSVLDGFNVCIFAYGQTGTGKTFTMEGSEEARGVNFRTLEKMFDIIKERQKFYCYDISVSVLEVYNEQIRDLLVAGNHQGSAAKRLEIRQASEGIHHIPGLVEARVNNMTEVWEVLQTGSNARAISSTNSNEHSSRSHCIHCVMVKGENLLNGECTRSKLWLVDLAGSERVAKTEVHGDRLKETQNINRSLSALGDVISALATKSSHIPFRNSKLTHLLQDSLGGDSKALMFVQISPNENDLSETICSLNFASRVRGIELGPARKHLDTVELLRHKQIADKVKQEIKMKDMQIKKMEETIHGLESKMKERDIRNKNLQEKVKELESQLLIERKLARQHVDSKIAEQHQMKHQEEQNNALMRSALASRPLGSLKNFNDSVSGGWCKDQQINSAKPLTESNLIKPFMPFATMESSIKCIDHAEKENNPDMAEKALLPKRPGRASSICMMAPRVPSAIASRRNSLIPLPSIPSLTQFQSPLLPNLTNQVDQKDVIGEVETNCVPAQTHCESPKEVRIGAKRIGSILRRSLHKKIQVKSPLHQHMRKVGVNVGMEKVRVSIGSRGRLAPRGQVGCRKGGTRDIQQKNSQKEKERGWI 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3049g00020 1043 Coils Coil 306 326 - -
Vium3049g00020 1043 SMART kinesin_4 380 716 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3049g00020 1043 Coils Coil 355 375 - -
Vium3049g00020 1043 MobiDBLite consensus disorder prediction 206 220 - -
Vium3049g00020 1043 Gene3D Kinesin motor domain 323 710 IPR036961 -
Vium3049g00020 1043 Coils Coil 729 784 - -
Vium3049g00020 1043 MobiDBLite consensus disorder prediction 1029 1043 - -
Vium3049g00020 1043 MobiDBLite consensus disorder prediction 187 220 - -
Vium3049g00020 1043 Coils Coil 226 277 - -
Vium3049g00020 1043 Pfam Kinesin motor domain 388 708 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3049g00020 1043 PRINTS Kinesin heavy chain signature 578 595 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3049g00020 1043 PRINTS Kinesin heavy chain signature 456 477 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3049g00020 1043 PRINTS Kinesin heavy chain signature 658 679 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3049g00020 1043 PRINTS Kinesin heavy chain signature 609 627 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3049g00020 1043 ProSitePatterns Kinesin motor domain signature. 608 619 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vium3049g00020 1043 FunFam kinesin-like protein KIN-14R 327 710 - -
Vium3049g00020 1043 CDD KISc_C_terminal 380 710 - -
Vium3049g00020 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 746 IPR027417 -
Vium3049g00020 1043 MobiDBLite consensus disorder prediction 191 205 - -
Vium3049g00020 1043 PANTHER KINESIN-LIKE PROTEIN KLP-3 198 851 IPR027640 GO:0003777|GO:0007018
Vium3049g00020 1043 ProSiteProfiles Kinesin motor domain profile. 382 708 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3049g00020 1043 MobiDBLite consensus disorder prediction 1013 1043 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3049g00020 Vium-Chr3049 131991 137076 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3049g00020 240 735 Calmodulin-binding Proteins AT5G65930 37.381 2.16e-83 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3049g00020 K10406 - gmx:100817247 1806.57