Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3049g00019 ATGGAGGATACTAATCAATGGCGTCGCTATGACCATGACCCACTTCTTCTCACCGACGTTTCTTTGCAACAAGAATCCTCTTCTTATACTCGCTGTTCCAATTCTCTTTCGCAAACATCACTGAGCTCTCGGAGTTTGGCTATGGAGGATGTGCCCGTGTGTGGTGACAGTGCCAGTATCGGAGGGCTGGGAATTGCTGCTCCAGGATTTTCTCGGGAAAATGGAGGTTTGGAAGGGAACAGCATGAAGTTCGATGACCCAATTGTGAAAGATGTGTTTGATGGAAGATCTATTTTGGGGTATTCTCTAGCATCCCCAGATTTGGTTATTTGTGGTGGCTCACCGGATATTGCTGGAATTAGCTGTTGTGATTCCCCTGAGTTTTTGAAGAACCAATATTACAAGAATGTGGAGTCATCTGTGGAGCTTTCTCTAGAGTATGGAATCAAGGGGTCTCAAGTTGAAGTTGACAATGGCCCTAAGATGCCAACTGTTAAATTCTCCAACCTCTGTCAAACTTTTGAGCAAGAGGAAGAGCTTCTGAGCCCTGAAGCCTCCTTTGAACTTCTTCCACCCCTTCTAACCAAGGATGAGGCACCCCATGATTCCCCTCCAAGAGATGCTGAGATGACAGAAGATAATGGAGTGTCTGAGGAGGCAGAATTGGGGTTCTCAGAAGATGCTGATGATATTGGGGTAGAAGAGAAACTTAAAAGGCTGAAAAGAGACTTTGAGTGTCAGAGAAAGGAGCTGGCAGAAACAAGGAGGGAGTTAGGAGAGGTCAAGAAGGAGAATCAACAGAAGAGTAAAGAGTGTCAAGAAGCTTGGAACTCCTTGAAAGAGCTTCAGAATGAGCTAATGCGCAAGTCCATGCACGTAGGATCTTTGGCATTTGCCATTGAGGGACAAGTGAAAGAGAAAAGTAGGTGGTTTTCGTCACTGAGAGATTTAACAAGGAAATTGAAGATTTTGAAAATGGAACACATGAAGCTATTAGAAGAAGCTGAGGAAAGCAAAAACTATCAAGCAGATATGAAAGAAATGGGGCATATTATCAGGTCCAAAATAAATGAGCAACTGGAGTCCCTTGAAGATCTCAAGTCCAAATATGCCGAAGGGGTTAAGGAACGGAAAGAGCTTTACAACAAGGTTTTGGAGTTGAGAGGAAACATAAGGGTCTTTTGCCGTTGTAGGCCTCTCAATGCTGAAGAGATAGCCGCAGGAGCAACCATGGCCTTAGATTTTGAATCTGCGAAAGATGGTGAGCTAACTGTAATGTCAAATGGAGCTCCTAAAAAGACTTTCAAGTTCGATGCTGTCTTTGATCCCCAAGCTGAACAAGCTGATATTTTTGAAGACACAGCACCGTTTGCGACATCAGTTTTAGATGGATTCAACGTATGCATTTTTGCATATGGACAGACTGGAACAGGAAAAACTTTCACAATGGAGGGCAGTGAAGAGGCTCGAGGTGTAAACTTTAGGACTCTCGAAAAAATGTTCGACATAATCAAGGAGAGACAGAAGTTTTATTGTTATGATATTTCAGTAAGTGTCTTAGAAGTGTACAATGAGCAAATAAGAGATTTGCTGGTTGCAGGAAATCATCAAGGATCAGCTGCAAAAAGACTTGAAATAAGGCAAGCTAGTGAAGGAATACATCACATTCCAGGGTTGGTTGAGGCACGTGTGAATAATATGACTGAAGTCTGGGAAGTCCTACAAACTGGAAGCAATGCAAGGGCAATAAGCTCAACCAATTCCAATGAGCATAGCAGTCGATCACACTGCATTCACTGTGTTATGGTTAAGGGAGAGAATTTGTTGAATGGGGAATGCACGAGAAGCAAGCTATGGTTGGTGGATCTAGCGGGCAGTGAACGAGTGGCAAAGACAGAAGTTCATGGTGATAGATTGAAGGAGACACAGAATATTAACAGGTCTCTGTCTGCACTTGGTGATGTCATATCAGCTCTTGCAACGAAAAGTTCACACATCCCATTCAGGAACTCTAAGCTTACACACTTGTTGCAAGACTCATTAGGAGGAGATTCAAAAGCACTCATGTTTGTACAGATCAGTCCTAATGAAAACGATTTAAGTGAGACAATTTGCTCTCTTAATTTTGCTAGTAGAGTAAGAGGAATAGAATTGGGCCCTGCAAGAAAGCATTTGGACACTGTTGAGCTTTTGAGACACAAACAAATTGCTGATAAAGTTAAACAAGAGATAAAGATGAAGGATATGCAAATCAAGAAGATGGAGGAAACAATCCATGGATTAGAGTCCAAGATGAAGGAAAGAGATATCAGAAACAAAAATCTGCAAGAGAAGGTCAAGGAACTGGAATCACAGCTTCTGATTGAAAGAAAGTTGGCACGTCAACATGTAGACTCAAAGATAGCTGAGCAGCACCAAATGAAACATCAAGAAGAGCAAAATAATGCACTTATGAGATCAGCACTCGCAAGTCGACCTCTAGGAAGTCTCAAGAATTTCAATGATTCAGTGAGTGGTGGATGGTGCAAAGACCAACAAATTAATTCTGCTAAACCACTCACAGAAAGCAACCTCATTAAACCTTTTATGCCCTTTGCTACGATGGAGAGCTCCATCAAGTGCATTGACCATGCTGAGAAAGAAAACAATCCTGACATGGCTGAAAAAGCCCTACTGCCAAAGAGGCCTGGAAGAGCTTCTTCCATCTGCATGATGGCACCACGTGTTCCTTCAGCTATTGCTTCAAGGAGAAACTCTCTGATTCCACTCCCAAGTATTCCTAGCTTAACACAGTTCCAATCACCACTGTTACCAAATTTAACAAACCAAGTTGACCAGAAAGATGTCATTGGGGAAGTAGAAACAAACTGTGTTCCTGCACAGACTCATTGTGAGAGTCCCAAAGAAGTTAGAATTGGCGCTAAGAGGATAGGTAGCATACTAAGAAGAAGCCTTCATAAGAAAATCCAAGTGAAGTCTCCACTTCATCAGCACATGAGGAAGGTTGGTGTAAATGTTGGGATGGAGAAAGTTAGAGTTTCCATTGGAAGTAGGGGTAGATTGGCACCAAGGGGGCAAGTAGGTTGTAGAAAAGGAGGAACTAGAGATATTCAACAAAAGAACAGTCAAAAGGAAAAGGAAAGGGGGTGGATCTGA 3156 0.4249 MEDTNQWRRYDHDPLLLTDVSLQQESSSYTRCSNSLSQTSLSSRSLAMEDVPVCGDSASIGGLGIAAPGFSRENGGLEGNSMKFDDPIVKDVFDGRSILGYSLASPDLVICGGSPDIAGISCCDSPEFLKNQYYKNVESSVELSLEYGIKGSQVEVDNGPKMPTVKFSNLCQTFEQEEELLSPEASFELLPPLLTKDEAPHDSPPRDAEMTEDNGVSEEAELGFSEDADDIGVEEKLKRLKRDFECQRKELAETRRELGEVKKENQQKSKECQEAWNSLKELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRKLKILKMEHMKLLEEAEESKNYQADMKEMGHIIRSKINEQLESLEDLKSKYAEGVKERKELYNKVLELRGNIRVFCRCRPLNAEEIAAGATMALDFESAKDGELTVMSNGAPKKTFKFDAVFDPQAEQADIFEDTAPFATSVLDGFNVCIFAYGQTGTGKTFTMEGSEEARGVNFRTLEKMFDIIKERQKFYCYDISVSVLEVYNEQIRDLLVAGNHQGSAAKRLEIRQASEGIHHIPGLVEARVNNMTEVWEVLQTGSNARAISSTNSNEHSSRSHCIHCVMVKGENLLNGECTRSKLWLVDLAGSERVAKTEVHGDRLKETQNINRSLSALGDVISALATKSSHIPFRNSKLTHLLQDSLGGDSKALMFVQISPNENDLSETICSLNFASRVRGIELGPARKHLDTVELLRHKQIADKVKQEIKMKDMQIKKMEETIHGLESKMKERDIRNKNLQEKVKELESQLLIERKLARQHVDSKIAEQHQMKHQEEQNNALMRSALASRPLGSLKNFNDSVSGGWCKDQQINSAKPLTESNLIKPFMPFATMESSIKCIDHAEKENNPDMAEKALLPKRPGRASSICMMAPRVPSAIASRRNSLIPLPSIPSLTQFQSPLLPNLTNQVDQKDVIGEVETNCVPAQTHCESPKEVRIGAKRIGSILRRSLHKKIQVKSPLHQHMRKVGVNVGMEKVRVSIGSRGRLAPRGQVGCRKGGTRDIQQKNSQKEKERGWI 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3049g00019 1051 Pfam Kinesin motor domain 396 716 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3049g00019 1051 Coils Coil 314 334 - -
Vium3049g00019 1051 ProSitePatterns Kinesin motor domain signature. 616 627 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vium3049g00019 1051 Coils Coil 363 383 - -
Vium3049g00019 1051 MobiDBLite consensus disorder prediction 214 228 - -
Vium3049g00019 1051 PANTHER KINESIN-LIKE PROTEIN KLP-3 206 859 IPR027640 GO:0003777|GO:0007018
Vium3049g00019 1051 SMART kinesin_4 388 724 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3049g00019 1051 FunFam kinesin-like protein KIN-14R 335 718 - -
Vium3049g00019 1051 ProSiteProfiles Kinesin motor domain profile. 390 716 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3049g00019 1051 Coils Coil 737 792 - -
Vium3049g00019 1051 MobiDBLite consensus disorder prediction 1037 1051 - -
Vium3049g00019 1051 MobiDBLite consensus disorder prediction 195 228 - -
Vium3049g00019 1051 Coils Coil 234 285 - -
Vium3049g00019 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 754 IPR027417 -
Vium3049g00019 1051 PRINTS Kinesin heavy chain signature 464 485 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3049g00019 1051 PRINTS Kinesin heavy chain signature 586 603 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3049g00019 1051 PRINTS Kinesin heavy chain signature 666 687 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3049g00019 1051 PRINTS Kinesin heavy chain signature 617 635 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3049g00019 1051 Gene3D Kinesin motor domain 331 718 IPR036961 -
Vium3049g00019 1051 CDD KISc_C_terminal 388 718 - -
Vium3049g00019 1051 MobiDBLite consensus disorder prediction 199 213 - -
Vium3049g00019 1051 MobiDBLite consensus disorder prediction 1021 1051 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3049g00019 Vium-Chr3049 131819 137076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3049g00019 248 743 Calmodulin-binding Proteins AT5G65930 37.381 1.58e-83 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3049g00019 K10406 - gmx:100817247 1799.25