Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3049g00017 ATGTTAATTTTAGTGGGGAACAAACAGGGAACAATGAGTTCCCTCGCTTCTCCAGTGAGTTTGGGGAGCCTCATGAGTGTGAGTTCCTCTAGAAGGTCTCACTCTGTGGTGAAGAGGGTCTCTTTTTCCAGAGGAAATTGTAAGGGGAGAAAGAGATGGCATTGTTTATCATTGTCTGTGTGTAGATATTCAGTGACCACAACTGATTTTATTGCTGATCAAGGGAATTCAGTGTCCCTTGATTCTAACAGTAGTAGTAGTAGTAGTAAGGGTGGAGATGATGGTGCTGGTTTTGTGCTTAAGCCTCCTCCAAGGCCTGTGTTAAAGTCACCAGAGAATAAGGGTGACCCCATTTTGGGGCCCTCAAGGACTGCTGGGAATCCTGGGGATGTGGAAGAGAGGAATAAGGTGATTGAATCACTTGGGGAGGTGTTAGAGAAGGCGGAAAAGCTGGGGAATTCCAAGGTGAATGGTGATAAGAACAATGGTTCAGTGAACAAACCAATAAGGAATAATGCTGGTGCTAGTCCTAAGGCTGAGAAACCGGTGAATTCAGCAGCATCTCAGAAGTCTAAAACCTTGAAGAGTGTATGGCGTAAAGGGGATAGTGTTGCATCGGTGCAGAAGGTTGTGAAGGAAGTGCCAAAGCCTAATTATAACAAGATTGAAGAGGAGAAGTCTCAAACTAGAGGAGGGGAGAAGGTGGTTTCTCAAACTCGTGCTCCTCAGCCACCTTTGAAACCCCAATTGCCTTCAAAACCTCAACCACCTTCAAAACCTCAACCTGCGTTATTATCTAAACCTTCTATAGCTCCCCCACCTGTCAAAAAACCTGTTGTCTTGAGGGACAAAGGAGCAGCTGAAACATCAGTTAAACCCAAAGAAAAGAAGTCACCTATCTTGATTGACAAGTTTGCTTCCAAGAAACCAGTAGTTGATCCTCTAATTGCGCAAGCAGTTCTAGCACCTCCAAAACCAGGGAAGGCACCTTCCCCGGGAAAGTTTAAAGATGATTTTCGGAAGAAAGGTGCTCTGGCTGGGGGAGGACGTAGAAGACGAATTTTGGATGATGATGATGCTGATGTGATTCATGAGGCATCAGAGCTTGATGTCTCTATTCCTGGTGCCGCAACAGCAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGAAAGGCAGCACGACTCCAGGCTGCTAGGGATGCAGCTCCTGTCAAAGTAGAAATTCTGGAGGTTGGTGACAGTGGTATGCTGGTGGAGGAGTTGGCCTATTGTTTGGCAACCAGTGAAGGTGAAATCCTTGGTTATCTATACTCCAAGGGGATTAAACCAGATGGGGTACAAACACTTGACAACGATATGGTAAAGATGGTTTGTAAAGAGTATGATGTTGAAGTCATAGATGCAGACCCGGTCAAAGTTGAAGGCTTAGTGAAGAAAAGAGAAATTCTTGATGAAGATGACCTCGATAAACTCAAAGATAGGCCTCCTGTAATCACTATTATGGGCCATGTAGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCCGCTTCTGAAGCTGGTGGGATCACGCAAGGAATTGGGGCCTATAAAGTGGAAGTACCTGTTGATGGCAAAAAGTTACCCTGTGTTTTCCTTGACACTCCTGGACACGAGGCATTTGGAGCTATGAGAGCTCGTGGAGCAAGTGTAACAGACATTGCTATTATTGTTGTGGCTGCTGATGATGGGATTCGTCCTCAAACAAATGAAGCTATTGCTCATGCCAAAGCAGCAGGAGTACCCATAATCATTGCAATAAACAAGATAGATAAAGATGGAGCAAATCCAGAACGAGTGATGCAGGAGCTTTCTTCAATTGGTTTAATGCCAGAAGACTGGGGTGGTAGCACCCCGATGGTTCCGATAAGTGCTCTTAAAGGGCAGAATCTAGACGATCTCCTGGAAACTGTTATGCTTGTTGCTGAGTTGCAAGAGCTGAAAGCTAATCCGGATAGAAGTGCAAAGGGAACAGTCATCGAAGCAGGGCTAGATAAATCAAAGGGACCATTTGCTACATTTATTGTGCAGAATGGCTCTCTTAGACGGGGTGATATAGTAGTTTGTGGAGAAGCTTTTGGAAAGGTGCGGGCTTTATTTGATGATGGTGGAAAGCGTGTTGATGAAGCTACACCTTCTGTACCTGTACAGGTTATTGGATTGAATAATGTTCCTATTGCTGGTGATGAATTCGAGGTTGTTGAATCCCTTGATGCTGCACGTGAAAGGGCTGAGGCTCGTGCGGAGTCATTGCGAAACGAGCGCATTTCAGCAAAGGCAGGAGATGGCAAAGTCACCCTTTCTTCCTTAGCTTCAGCAGTTTCCTCAGGAAAGCTGTCTGGACTTGACTTGCATCAATTAAATATTATTTTGAAGGTTGATCTTCAGGGATCTATTGAAGCTGTAAGAAAAGCTCTGCAGGTGCTGCCACAAGACAATGTTACATTGAAGTTTTTGTTGGAAGCAACAGGTGATGTAAGCACTAGTGATGTGGACCTTGCAGTTGCAAGCAAGGCCATCATTGTGGGATTTAATGTGAAAGCATCAGGCTCTGTGAAAAGCTATGCAGATAACAAAGCAGTTGAGATTAGATTATACAGAGTTATTTATGAATTAATTGATGACGTACGAAATGCAATGGAAGGGCTTCTAGAACCAGTTGAGGAACAAGTAACAATTGGTTCAGCAGTAGTACGAGCTGTATTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGCATGATTACAGAGGGGAAGGTGCTAAAAGATTGTGGTATTCGAGTCAAGCGGAAGGGAAAAATAGTTCATGTTGGTATTATTGATTCTTTGAGACGAGTGAAGGAAATTGTTAAGGAGGTAAATGCTGGTCTTGAGTGTGGACTTGGGTTGGAAGACTTTGATGACTGGGAAGAGGGTGACATTCTTGAAGCCTTCAACACAGTTGAGAAGAAGAGGACCCTTGAAGAGGCCTCAGCATCAATGGCAGCTGCTGTGGAGGGAGTAGGAGTTGCACGGTAG 3069 0.4457 MLILVGNKQGTMSSLASPVSLGSLMSVSSSRRSHSVVKRVSFSRGNCKGRKRWHCLSLSVCRYSVTTTDFIADQGNSVSLDSNSSSSSSKGGDDGAGFVLKPPPRPVLKSPENKGDPILGPSRTAGNPGDVEERNKVIESLGEVLEKAEKLGNSKVNGDKNNGSVNKPIRNNAGASPKAEKPVNSAASQKSKTLKSVWRKGDSVASVQKVVKEVPKPNYNKIEEEKSQTRGGEKVVSQTRAPQPPLKPQLPSKPQPPSKPQPALLSKPSIAPPPVKKPVVLRDKGAAETSVKPKEKKSPILIDKFASKKPVVDPLIAQAVLAPPKPGKAPSPGKFKDDFRKKGALAGGGRRRRILDDDDADVIHEASELDVSIPGAATARKGRKWSKASRKAARLQAARDAAPVKVEILEVGDSGMLVEELAYCLATSEGEILGYLYSKGIKPDGVQTLDNDMVKMVCKEYDVEVIDADPVKVEGLVKKREILDEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVEVPVDGKKLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPERVMQELSSIGLMPEDWGGSTPMVPISALKGQNLDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGSLRRGDIVVCGEAFGKVRALFDDGGKRVDEATPSVPVQVIGLNNVPIAGDEFEVVESLDAARERAEARAESLRNERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRKALQVLPQDNVTLKFLLEATGDVSTSDVDLAVASKAIIVGFNVKASGSVKSYADNKAVEIRLYRVIYELIDDVRNAMEGLLEPVEEQVTIGSAVVRAVFSSGSGRVAGCMITEGKVLKDCGIRVKRKGKIVHVGIIDSLRRVKEIVKEVNAGLECGLGLEDFDDWEEGDILEAFNTVEKKRTLEEASASMAAAVEGVGVAR 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3049g00017 1022 Coils Coil 752 779 - -
Vium3049g00017 1022 MobiDBLite consensus disorder prediction 216 231 - -
Vium3049g00017 1022 FunFam Translation initiation factor IF-2 801 906 - -
Vium3049g00017 1022 SUPERFAMILY Translation proteins 908 1002 IPR009000 -
Vium3049g00017 1022 MobiDBLite consensus disorder prediction 149 303 - -
Vium3049g00017 1022 FunFam Translation initiation factor IF-2 669 787 - -
Vium3049g00017 1022 Gene3D - 801 906 IPR036925 -
Vium3049g00017 1022 MobiDBLite consensus disorder prediction 244 275 - -
Vium3049g00017 1022 CDD IF2_eIF5B 496 662 - -
Vium3049g00017 1022 Pfam Translation-initiation factor 2 801 894 IPR023115 -
Vium3049g00017 1022 PRINTS GTP-binding elongation factor signature 565 576 IPR000795 GO:0003924|GO:0005525
Vium3049g00017 1022 PRINTS GTP-binding elongation factor signature 549 559 IPR000795 GO:0003924|GO:0005525
Vium3049g00017 1022 PRINTS GTP-binding elongation factor signature 497 510 IPR000795 GO:0003924|GO:0005525
Vium3049g00017 1022 PRINTS GTP-binding elongation factor signature 601 610 IPR000795 GO:0003924|GO:0005525
Vium3049g00017 1022 MobiDBLite consensus disorder prediction 281 303 - -
Vium3049g00017 1022 Hamap Translation initiation factor IF-2 [infB]. 8 1002 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vium3049g00017 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 669 IPR027417 -
Vium3049g00017 1022 Gene3D - 490 668 IPR027417 -
Vium3049g00017 1022 Gene3D Translation factors 907 1003 - -
Vium3049g00017 1022 MobiDBLite consensus disorder prediction 322 343 - -
Vium3049g00017 1022 FunFam Translation initiation factor IF-2 490 668 - -
Vium3049g00017 1022 MobiDBLite consensus disorder prediction 75 132 - -
Vium3049g00017 1022 Gene3D Translation factors 669 785 - -
Vium3049g00017 1022 MobiDBLite consensus disorder prediction 75 92 - -
Vium3049g00017 1022 NCBIfam translation initiation factor IF-2 416 1004 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vium3049g00017 1022 CDD IF2_mtIF2_II 673 754 IPR044145 -
Vium3049g00017 1022 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 800 912 IPR036925 -
Vium3049g00017 1022 SUPERFAMILY Translation proteins 669 753 IPR009000 -
Vium3049g00017 1022 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 493 666 IPR000795 GO:0003924|GO:0005525
Vium3049g00017 1022 ProSitePatterns Initiation factor 2 signature. 955 977 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vium3049g00017 1022 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 181 1010 IPR015760 -
Vium3049g00017 1022 NCBIfam small GTP-binding protein domain 495 656 IPR005225 GO:0005525
Vium3049g00017 1022 CDD mtIF2_IVc 912 994 - -
Vium3049g00017 1022 MobiDBLite consensus disorder prediction 155 171 - -
Vium3049g00017 1022 FunFam Translation initiation factor IF-2 906 1003 - -
Vium3049g00017 1022 Pfam Elongation factor Tu GTP binding domain 498 658 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3049g00017 Vium-Chr3049 113392 128765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3049g00017 472 892 Eukaryotic Initiation Factors Gene Family AT1G76810 29.918 2.68e-31 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3049g00017 K02519 - gmx:100778924 1627.84