Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3049g00016 ATGGGTGTGAACGAAAATTTCAACAAGGATGATGATCATCATGAGTGTGTGGATGACGATGAAATCCCACTTCCTGGATTTCGATTTCATCCCACAGACGAAGAGCTTGTTAGTTTCTATCTACGAAGGAAGCTTGACAAGAAACCCATCAGCATCGAGCTCATCAAACAGATTGATATTTACAAATACGATCCTTGGGATCTTCCAAAGAGCAATGGCAGTGGAGGAGAGAAGGAGGGGTACTTCTTCTGCAGAAGAGGGAGGAAGTATAGGAATAGCATAAGGCCTAATAGAGTGACTGGGTCTGGGTTCTGGAAAGCAACCGGCATAGACAAACCAGTGTACTCACAAGGTGGAGAAGGCAATGACTGCATTGGACTCAAAAAAACACTTGTCTATTACCGTGGCATTGCAGGCAAAGGCACCAAAACCGATTGGATGATGCACGAGTTTCGACTTCCTTCTAACACAGACACCAACACAAGCCTTCCAAACTCCAGGAATTATGTCGATGTTCCCCTAGAAGCTGAAATTTGGACGTTGTGTAGAATTTTCAAGAGAAACGTGTCACAGAGGAAGCACGTGGCGGACTTGAAACAAGTATCTGCCAAGCGCCATGCATTTTATGACAAGAGCTCGAGAGCGAGCAACATGGAGTCTGACAGTGGTAACCAAGAATCGTATATAAACTTTGGTGGGTACTATCACAACGAGCAGAAACCCGTCATCAACTACACAAACTGTGATAAAAGGAATCAGTTTAGTGTGGTGAGTCAGTTGTGTTCTACAGTGGCACAGCAGCAACCTCAACTGACTGCACCGTCTTCTAACCTTTGGAGTAACCCACCTGGGAACGATTTCTTCACATTCGATAACTGGGATGAACTTGGATCCGTAGTGAAGTTTGCTGTTGATTCGCCTAGCTTGTAG 930 0.4495 MGVNENFNKDDDHHECVDDDEIPLPGFRFHPTDEELVSFYLRRKLDKKPISIELIKQIDIYKYDPWDLPKSNGSGGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSQGGEGNDCIGLKKTLVYYRGIAGKGTKTDWMMHEFRLPSNTDTNTSLPNSRNYVDVPLEAEIWTLCRIFKRNVSQRKHVADLKQVSAKRHAFYDKSSRASNMESDSGNQESYINFGGYYHNEQKPVINYTNCDKRNQFSVVSQLCSTVAQQQPQLTAPSSNLWSNPPGNDFFTFDNWDELGSVVKFAVDSPSL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3049g00016 309 SUPERFAMILY NAC domain 24 187 IPR036093 GO:0003677|GO:0006355
Vium3049g00016 309 FunFam NAC domain-containing protein 35 32 190 - -
Vium3049g00016 309 ProSiteProfiles NAC domain profile. 23 187 IPR003441 GO:0003677|GO:0006355
Vium3049g00016 309 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 243 - -
Vium3049g00016 309 Pfam No apical meristem (NAM) protein 25 153 IPR003441 GO:0003677|GO:0006355
Vium3049g00016 309 Gene3D NAC domain 32 191 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3049g00016 Vium-Chr3049 91137 92770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3049g00016 10 187 NAC Transcription Factor Family AT5G39820 58.421 1.94e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium3049g00016 NAM 1.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3049g00016 - - gmx:100790471 536.954