Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3046g00001 ATGAGTTTACGATCACAAAATTCATCAAAGTTGACAACTTTCATCTCTTCCGAAAACATGAGCAACCCTGGAGATGAAAAGGAGCTGTATCAAAAGAAGAGGAAATCCACCATTTGTGAAGCCTCTAACTTTAGGACATCGAGGAGAAGATTCTGCAGCAGCAACCAAATTGAAGAGGAGATGAACAAGGGAGTTTCAACAACATTGAAGCTTTACAATGACCCATGGAAGATCAAGAAGACTCTAACCGATAGTGATTTGGGAATCCTAAGTAGACTCTTGCTGGCTGCAGATTTGGTGAAGAAACAAATTTTGCCTATGTTGGGTGCAGATCATGCAAGAGCTGCTGAAACTGAAGAAGGTACCCCAGTTAGAGTTTGGGACATGGACACCAAATCCATGCACCAACTCGTCCTAAAGCGATGGTCTTCATCCAAGAGCTATGTTCTTATTGGAAAGTGGAACCAAGACTTCGTCAGAAGAAGAGATCTAAAGAAAGGTGATGAGATCGGATTTCATTGGGATCCATATAATTGCATTTTCAATTTCTGTGTTCTCAAACGAGCTATGCCAGATAATTAA 582 0.4089 MSLRSQNSSKLTTFISSENMSNPGDEKELYQKKRKSTICEASNFRTSRRRFCSSNQIEEEMNKGVSTTLKLYNDPWKIKKTLTDSDLGILSRLLLAADLVKKQILPMLGADHARAAETEEGTPVRVWDMDTKSMHQLVLKRWSSSKSYVLIGKWNQDFVRRRDLKKGDEIGFHWDPYNCIFNFCVLKRAMPDN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3046g00001 193 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 27 188 - -
Vium3046g00001 193 SUPERFAMILY DNA-binding pseudobarrel domain 74 188 IPR015300 -
Vium3046g00001 193 MobiDBLite consensus disorder prediction 1 31 - -
Vium3046g00001 193 Gene3D - 74 190 IPR015300 -
Vium3046g00001 193 CDD B3_DNA 76 187 IPR003340 GO:0003677
Vium3046g00001 193 MobiDBLite consensus disorder prediction 1 24 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3046g00001 78 173 RAV Transcription Factor Family AT1G50680 33.010 2.04e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3046g00001 - - pvu:PHAVU_009G204600g 344.354