Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3045g00004 ATGCATAAAAACGATGCTGCAGTGGAACTACCTACCAGTCGCATTGCTTGTGTAGTTGCGACTCACTGGATGGTTTTCCTTTCGTCCACGCTGAATTTCGCCCGTGGACCCAACGGGGGAGCTCATATTGGGCTCGTTATGGTGAGAAGAAGAAGAGAAGAGGAGGCGAAGGTGGAGGAGAAAGAGAAGGAAGAGGACAAGAACGAGGAGGTGGACGTAGCTCAACAAGCTGATGGGAGACACAGAAGCTCGCTAGTGACTAATGTAGAGGGTGGTTTGCTGGTGGCTGACACAGAGGGTGATGGCTTACATGGAGAGTGTTGGGGTTCGGTCCCAGAGATCGGCTGTGCCGGTACGTACTTTCAGAAGCCGAAGCCATTTTCAGATGTTGTGGCGTTGTCAGGCTTCACTGAGAGATGCATGAGCCACTCCAGAATTGTCCATATATCAGACCCCACTCTCCTTCAACCCTTTCAATTCCCATCTTTTCTTCTCTTTACATCCATCTTTCTCTCTTTGCCTAACATGAACAACACCTCCACCCACGACTTCATGAACGTAGATTCCTTCTCTCAGCTTCCCTTTCTCCGCTCCTCTCCTTCCAAAGATAAAGACAAATCCATTCGTCTCTTTGGCCAGGATTTCTCCCACGCCCCCAAAACCACCCATACACCCTCCGACAACCACCACAACCACACCATCAACACACAAAACGCCGAGCCCACCCGCAGATTCGAGTGTCATTACTGTTGCAGAAACTTTCCTACTTCTCAAGCCTTAGGCGGCCATCAAAACGCCCACAAACGAGAACGCCAACACGCCAAACGACACCTCCACTCAGCCATGCTCGACACCACCCTCCTCTCCGATCCTACCACCTACGCTTTCACAAACCCCACCTTCAGTTCTTCCACAGTCTCTTATTCCTCTCACACAGCTTGGGATTGTAACGCTGCTAGCGGAAGGTTCTATGGAAGCTACTATCCTCACCTGCTTCAACCCATCAATGGAAGCCCCTTGGGCGTGTGGCGAATCCCCAACGCCACTGCAGCCACTCACACCCACCACCAGAGTAACCCTATTTTACACCGTCAATGCGCCTTGCCTTTGCTTTCTGGCCAGGAAATGGTGAGGGCGAGGATGGGTCCCTCCCCTTCTGGCTCGCAGTTTGGTTATGACCTCAAACCCAGCGTAAAGGACCATGTGAGTTTGGATCTTCATCTGTAA 1227 0.5151 MHKNDAAVELPTSRIACVVATHWMVFLSSTLNFARGPNGGAHIGLVMVRRRREEEAKVEEKEKEEDKNEEVDVAQQADGRHRSSLVTNVEGGLLVADTEGDGLHGECWGSVPEIGCAGTYFQKPKPFSDVVALSGFTERCMSHSRIVHISDPTLLQPFQFPSFLLFTSIFLSLPNMNNTSTHDFMNVDSFSQLPFLRSSPSKDKDKSIRLFGQDFSHAPKTTHTPSDNHHNHTINTQNAEPTRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRHLHSAMLDTTLLSDPTTYAFTNPTFSSSTVSYSSHTAWDCNAASGRFYGSYYPHLLQPINGSPLGVWRIPNATAATHTHHQSNPILHRQCALPLLSGQEMVRARMGPSPSGSQFGYDLKPSVKDHVSLDLHL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3045g00004 408 SUPERFAMILY beta-beta-alpha zinc fingers 242 273 IPR036236 -
Vium3045g00004 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 245 272 IPR013087 -
Vium3045g00004 408 MobiDBLite consensus disorder prediction 58 80 - -
Vium3045g00004 408 PANTHER ZINC FINGER PROTEIN GIS 178 408 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Vium3045g00004 408 ProSitePatterns Zinc finger C2H2 type domain signature. 247 267 IPR013087 -
Vium3045g00004 408 MobiDBLite consensus disorder prediction 58 77 - -
Vium3045g00004 408 Coils Coil 49 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3045g00004 Vium-Chr3045 34278 62386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3045g00004 181 408 C2H2 Transcription Factor Family AT2G41940 39.850 5.56e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3045g00004 - - vum:124832912 794.653