Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3043g00027 ATGGAGTTTCCGAACGAAGCAATATCAGAAGGGTGTTCTCAGAAGAAAAGTGGAAGAGGGAAAATAGAGATCAAGCGGATCGAGAACACCACCAATCGGCAAGTTACCTTCTGCAAACGTCGCAACGGGTTGCTCAAGAAGGCTTATGAATTGTCTGTTCTCTGTGATGCCGAAGTTGCTCTCGTTGTCTTCTCAAGCCGTGGACGCCTTTATGAGTATGCAAACAACAGTGTTAGAGGAACTATCGATAGGTACAAGAAAGCATGCGCTGCTTCCTCAAATGCAGAATCTGTCTCTGAAGCTAATACACAGTTTTATCAGCAAGAATCATCCAAGTTAAAAAGACAAATCAGAGACATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCTCTTAGTTCTCTAAGTCTGAAGGAATTAAAGAATCTTGAGAGTAGATTGGAGAAAGGTTTGAGCAGAGTCAGATCCAGAAAGCATGAGACATTGTTTGCGGATATCGAATTCATGCAAAAGCGGGAAATAGAGCTGCAAAACCACAATAATTTTCTGCGAGCTAAGATAGCTGAACACGATAGAGAAGAAGAACAACAGCAACATATGACAGGAAATGTGTGCGAGTCCTTACCAGCTTCACAGTCATATGACAGGAATTTCTTCCCTGTAAACCTCATAGATTCCAGTCATCATCAATACTCACGTCAAGACCACACTGCTCTTCAACTTGTCTGA 729 0.4225 MEFPNEAISEGCSQKKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIDRYKKACAASSNAESVSEANTQFYQQESSKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREIELQNHNNFLRAKIAEHDREEEQQQHMTGNVCESLPASQSYDRNFFPVNLIDSSHHQYSRQDHTALQLV 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3043g00027 242 Coils Coil 137 157 - -
Vium3043g00027 242 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Vium3043g00027 242 CDD MADS_MEF2_like 18 94 IPR033896 GO:0000977|GO:0045944
Vium3043g00027 242 FunFam agamous-like MADS-box protein AGL11 29 112 - -
Vium3043g00027 242 Gene3D - 29 97 IPR036879 GO:0003677|GO:0046983
Vium3043g00027 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Vium3043g00027 242 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Vium3043g00027 242 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Vium3043g00027 242 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Vium3043g00027 242 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Vium3043g00027 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 199 - -
Vium3043g00027 242 Pfam K-box region 101 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium3043g00027 242 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Vium3043g00027 242 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium3043g00027 242 Coils Coil 106 126 - -
Vium3043g00027 242 SUPERFAMILY SRF-like 18 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3043g00027 Vium-Chr3043 155628 161125 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3043g00027 13 242 MADS-box Gene Family AT3G58780 69.748 9.15e-113 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium3043g00027 K-box 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3043g00027 K09264 - gmx:100792224 406.371