Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3043g00020 ATGTTCGGGGACATTATCTATTTTATTTTGTGGGGTTTGTTTCCCCTACTACTTTTTCTAGTTTCTTTCATTTTCTTGAGGCACGAGCAATGCTGCAAAGACAAAAGAAAGCTGCCACCAGGGGAAATGGGGTTTCCACTGATAGGGGAGACCATGGAATTCTTCAATGCTCAGAGGAGAAACAAGTTATTTGAAGAGTTTTTTCATCCTCGAATTCTGAAACATGGGAAGATCTTCAGAACAAGGATCATGGGGTCTCCAACTGTGGTTGTCAATGGAGCTGAGGCCAATAAATTCTTACTGTCCAACGAGTTCAAGTTGGTGAAAAGCTCTTGGCCTTCTTCATCGGTTGAGCTCATGGGAAGGGACTCTATAATGGAGAAAGATGGTGAAAGGCACCGGTTCCTCCGTGGTGTCATTGCCACAAGCCTTGGTTATGCTGGACTTGAGCTACTGGTTCCAAGATTATGCAACTCTGTTCAGTTTCATTTAGCTACAAACTGGAAGGGCCAAGAGAATATCAGTATTCACCGTTCAACAAAAGTCCTCACTTTTAGCATAGTGTTTGAGTGTTTGTTGGGAATCAAAGTGGAGCCAGGTATGTTAGATACCTTTGAAAGAGTGTTGGAAGGAGTGTTTTCCCCAGCTGTTATGTTTCCAGGTTCTAAATTTTGGAGGGCAAAGAAGGCCAGGGTGGAGATAGAAAAGATGTTGCTCAAAGTGGTGAGAGAGAAGAGAAAGGAAATGGAAGGAAGCTCAGAAAGAGAACAAGATGGAATGCTGCTGTCCAATTTGGTATGTGGGATGTTCCAAGGGGAGATAAGTGAAAAAGAAGTCATAGACAATGTGGTGTTACTAGTTTTTGCAGCTCATGATACCACTTCTTTTGCTGTTGCCATGACATTCAAAATGTTGTCTCAGCATCCTGATTGCTATGGAAAAATTCTTCAAGAACATGTTGCCATAATGAGCAACAAAAACCGGGGTGAGAATCTGACAATGGAGGATATAAAAAAGATGAAGTATACATGGCAAGTTGCGAGAGAAAGCATGAGATTGTTCCCTCCTATCTTTGGTTCTTTCAGAAAGGCTGTTACTGATATTGAATATGAAGGATTCGTGATTCCTAGAGGATGGAAGATGCTATGGACAACATACGGGACACATTACAATGAAGAATATTTCAAGGATCCTATGAATTTCAACCCAAGTAGGTTTGAGGAGGGAGTACCCCAATATGCATATGTTCCCTTTGGAGGAGGACCAAGAGTTTGTGCAGGGTACCAATTAGCCAAGTTAAACATCCTCGTATTTGTGCACTATGTTGTGACACAATACGAGTGGTTCTTACTCCATCCAGATGAACCTGTGACAATGGATCCCTTGCCTTTCCCTTCCCTCGGAATGCCCATCAGAATTTCTCCCAAACATGCATAA 1437 0.4224 MFGDIIYFILWGLFPLLLFLVSFIFLRHEQCCKDKRKLPPGEMGFPLIGETMEFFNAQRRNKLFEEFFHPRILKHGKIFRTRIMGSPTVVVNGAEANKFLLSNEFKLVKSSWPSSSVELMGRDSIMEKDGERHRFLRGVIATSLGYAGLELLVPRLCNSVQFHLATNWKGQENISIHRSTKVLTFSIVFECLLGIKVEPGMLDTFERVLEGVFSPAVMFPGSKFWRAKKARVEIEKMLLKVVREKRKEMEGSSEREQDGMLLSNLVCGMFQGEISEKEVIDNVVLLVFAAHDTTSFAVAMTFKMLSQHPDCYGKILQEHVAIMSNKNRGENLTMEDIKKMKYTWQVARESMRLFPPIFGSFRKAVTDIEYEGFVIPRGWKMLWTTYGTHYNEEYFKDPMNFNPSRFEEGVPQYAYVPFGGGPRVCAGYQLAKLNILVFVHYVVTQYEWFLLHPDEPVTMDPLPFPSLGMPIRISPKHA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3043g00020 478 Gene3D Cytochrome P450 28 475 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3043g00020 478 PRINTS E-class P450 group I signature 425 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3043g00020 478 PRINTS E-class P450 group I signature 278 295 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3043g00020 478 PRINTS E-class P450 group I signature 298 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3043g00020 478 PRINTS E-class P450 group I signature 384 408 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3043g00020 478 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3043g00020 478 PRINTS E-class P450 group I signature 415 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3043g00020 478 PANTHER CYTOCHROME P450 26 33 461 - -
Vium3043g00020 478 CDD CYP90-like 71 475 - -
Vium3043g00020 478 Pfam Cytochrome P450 39 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3043g00020 478 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 418 427 IPR017972 GO:0005506|GO:0016705
Vium3043g00020 478 PRINTS P450 superfamily signature 416 425 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3043g00020 478 PRINTS P450 superfamily signature 425 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3043g00020 478 PRINTS P450 superfamily signature 289 306 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3043g00020 478 PRINTS P450 superfamily signature 345 356 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3043g00020 478 FunFam Taxadiene 5-alpha hydroxylase 29 476 - -
Vium3043g00020 478 SUPERFAMILY Cytochrome P450 35 475 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3043g00020 Vium-Chr3043 119218 122184 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3043g00020 38 381 Cytochrome P450 AT2G42850 65.116 2.15e-158 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3043g00020 - - gmx:100793336 894.804